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Genomics

The gene structure and other genome annotation in PhytoMine are provided by a variety of curated source databases. In most cases PhytoMine includes all genome features that have chromosomal locations.
Data sets
Bulk download

Phytomine contains genomic data from the JGI flagship genomes:

We also have sequenced and annotation individual Brachypodium distachyon lines as part of the BrachyPan project: In addition, we have also included genomes from the model organism community and colloaborators, and previous releases of data:
Bulk data files for all organisms in Phytozome are available for download from the JGI Download Portal .
Related template queries

Show all CDSs for a specified gene with nucleotide sequence.

Show the DNA sequence flanking a specified gene.

Show all mRNAs for a specified gene with nucleotide sequence.

Gene & Proteins.

Show all UTRs for a specified gene with nucleotide sequence.

Show all proteins in a specific organism with polypeptide sequence.

All proteins for a specific organism

Show all mRNAs for an organism with nucleotide sequence.

Genes in a genomic Region.

CDS sequence for a specific transcript

Peptide sequence for a specific transcript

Nucleotide sequence for a specific transcript

All Pathways for an Organism

Query starting points

These links will take you to the Query Builder pages which allow you to make new queries and create template queries of your own