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Proteins

Protein annotation (including domain annotation) from Phytozome.
Data sets

Phytomine contains annotated proteome data from the JGI flagship genomes:

We also have sequenced and annotation individual Brachypodium distachyon lines as part of the BrachyPan project: In addition, we have also included genomes from the model organism community and colloaborators, and previous releases of data:
Bulk download
Bulk data files for all organisms in Phytozome are available for download from the JGI Download Portal .
Related template queries

Consensus sequence for a specific protein family

Protein Families of a Specified Organism

Protein Families of a Specific KOG Letter Identifier

GO-Annotations

GO term lookup.

Children of a specific GO term

GO Terms for a protein or list of proteins

GO Terms for a transcript or list of transcripts

Proteins with Two Specific PFAM Domains

Peptide sequence for a specific protein

All Located Protein Domains for an Organism

Protein Domains with GO terms.

Proteins with a specific PANTHER Domain in any organism.

Proteins with a PFAM Domain in a specific organism.

InterproScan results for specific organism.

Query starting points

These links will take you to the Query Builder pages which allow you to make new queries and create template queries of your own

ProteinDomain, Protein