Gene : Carub.0004s0466 C. rubella v1.1
Defline:  (1 of 2) PTHR11592:SF11 - PHOSPHOLIPID HYDROPEROXIDE GLUTATHIONE PEROXIDASE 1, CHLOROPLASTIC-RELATED Genomic Order:  466
Name:  ? Carub.0004s0466 Secondary Identifier:  ? PAC:39236484
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-4081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s0466 0.5kb upstream 0.5kb upstream 2345 true scaffold_4: 2125612-2127956 Capsella rubella
Carub.0004s0466 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 2125612-2126111 Capsella rubella
Carub.0004s0466 0.5kb downstream 0.5kb downstream 2345 true scaffold_4: 2126112-2128456 Capsella rubella
Carub.0004s0466 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 2127957-2128456 Capsella rubella
Carub.0004s0466 1.0kb upstream 1.0kb upstream 2845 true scaffold_4: 2125112-2127956 Capsella rubella
Carub.0004s0466 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 2125112-2126111 Capsella rubella
Carub.0004s0466 1.0kb downstream 1.0kb downstream 2845 true scaffold_4: 2126112-2128956 Capsella rubella
Carub.0004s0466 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 2127957-2128956 Capsella rubella
Carub.0004s0466 2.0kb upstream 2.0kb upstream 3845 true scaffold_4: 2124112-2127956 Capsella rubella
Carub.0004s0466 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 2124112-2126111 Capsella rubella
Carub.0004s0466 2.0kb downstream 2.0kb downstream 3845 true scaffold_4: 2126112-2129956 Capsella rubella
Carub.0004s0466 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 2127957-2129956 Capsella rubella
Carub.0004s0466 5.0kb upstream 5.0kb upstream 6845 true scaffold_4: 2121112-2127956 Capsella rubella
Carub.0004s0466 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 2121112-2126111 Capsella rubella
Carub.0004s0466 5.0kb downstream 5.0kb downstream 6845 true scaffold_4: 2126112-2132956 Capsella rubella
Carub.0004s0466 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 2127957-2132956 Capsella rubella
Carub.0004s0466 10.0kb upstream 10.0kb upstream 11845 true scaffold_4: 2116112-2127956 Capsella rubella
Carub.0004s0466 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 2116112-2126111 Capsella rubella
Carub.0004s0466 10.0kb downstream 10.0kb downstream 11845 true scaffold_4: 2126112-2137956 Capsella rubella
Carub.0004s0466 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 2127957-2137956 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374017 5261 Brassicaceae View MSA
123838768 5264 Brassicales-Malvales View MSA
124342773 5266 SBM View MSA
124240030 5268 Malvidae View MSA
124063282 5270 Rosid View MSA
123740898 5271 Pentapetalae View MSA
122792011 5272 Eudicot View MSA
122046042 5273 Angiosperm View MSA
121349724 5274 Embryophyte View MSA
123426849 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain