Gene : Carub.0004s1082 C. rubella v1.1
Defline:  (1 of 2) PTHR11926//PTHR11926:SF283 - GLUCOSYL/GLUCURONOSYL TRANSFERASES // UDP-GLYCOSYLTRANSFERASE 71D1-RELATED Genomic Order:  1082
Name:  ? Carub.0004s1082 Secondary Identifier:  ? PAC:39239057
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5390 Capsella rubella pathologic  
Crubella PWY-7055 Capsella rubella pathologic  
Crubella PWY-7140 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s1082 0.5kb upstream 0.5kb upstream 2941 true scaffold_4: 7323921-7326861 Capsella rubella
Carub.0004s1082 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 7323921-7324420 Capsella rubella
Carub.0004s1082 0.5kb downstream 0.5kb downstream 2941 true scaffold_4: 7324421-7327361 Capsella rubella
Carub.0004s1082 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 7326862-7327361 Capsella rubella
Carub.0004s1082 1.0kb upstream 1.0kb upstream 3441 true scaffold_4: 7323421-7326861 Capsella rubella
Carub.0004s1082 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 7323421-7324420 Capsella rubella
Carub.0004s1082 1.0kb downstream 1.0kb downstream 3441 true scaffold_4: 7324421-7327861 Capsella rubella
Carub.0004s1082 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 7326862-7327861 Capsella rubella
Carub.0004s1082 2.0kb upstream 2.0kb upstream 4441 true scaffold_4: 7322421-7326861 Capsella rubella
Carub.0004s1082 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 7322421-7324420 Capsella rubella
Carub.0004s1082 2.0kb downstream 2.0kb downstream 4441 true scaffold_4: 7324421-7328861 Capsella rubella
Carub.0004s1082 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 7326862-7328861 Capsella rubella
Carub.0004s1082 5.0kb upstream 5.0kb upstream 7441 true scaffold_4: 7319421-7326861 Capsella rubella
Carub.0004s1082 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 7319421-7324420 Capsella rubella
Carub.0004s1082 5.0kb downstream 5.0kb downstream 7441 true scaffold_4: 7324421-7331861 Capsella rubella
Carub.0004s1082 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 7326862-7331861 Capsella rubella
Carub.0004s1082 10.0kb upstream 10.0kb upstream 12441 true scaffold_4: 7314421-7326861 Capsella rubella
Carub.0004s1082 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 7314421-7324420 Capsella rubella
Carub.0004s1082 10.0kb downstream 10.0kb downstream 12441 true scaffold_4: 7324421-7336861 Capsella rubella
Carub.0004s1082 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 7326862-7336861 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368442 5261 Brassicaceae View MSA
123840802 5264 Brassicales-Malvales View MSA
124349707 5266 SBM View MSA
124247034 5268 Malvidae View MSA
124067865 5270 Rosid View MSA
123749045 5271 Pentapetalae View MSA
122796791 5272 Eudicot View MSA
122049066 5273 Angiosperm View MSA
121351097 5274 Embryophyte View MSA
123428681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain