Gene : Carub.0004s1328 C. rubella v1.1
Defline:  (1 of 2) PTHR12741:SF9 - CALLOSE SYNTHASE 1-RELATED Genomic Order:  1328
Name:  ? Carub.0004s1328 Secondary Identifier:  ? PAC:39237820
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6773 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s1328 0.5kb upstream 0.5kb upstream 12498 true scaffold_4: 8365158-8377655 Capsella rubella
Carub.0004s1328 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 8365158-8365657 Capsella rubella
Carub.0004s1328 0.5kb downstream 0.5kb downstream 12498 true scaffold_4: 8365658-8378155 Capsella rubella
Carub.0004s1328 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 8377656-8378155 Capsella rubella
Carub.0004s1328 1.0kb upstream 1.0kb upstream 12998 true scaffold_4: 8364658-8377655 Capsella rubella
Carub.0004s1328 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 8364658-8365657 Capsella rubella
Carub.0004s1328 1.0kb downstream 1.0kb downstream 12998 true scaffold_4: 8365658-8378655 Capsella rubella
Carub.0004s1328 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 8377656-8378655 Capsella rubella
Carub.0004s1328 2.0kb upstream 2.0kb upstream 13998 true scaffold_4: 8363658-8377655 Capsella rubella
Carub.0004s1328 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 8363658-8365657 Capsella rubella
Carub.0004s1328 2.0kb downstream 2.0kb downstream 13998 true scaffold_4: 8365658-8379655 Capsella rubella
Carub.0004s1328 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 8377656-8379655 Capsella rubella
Carub.0004s1328 5.0kb upstream 5.0kb upstream 16998 true scaffold_4: 8360658-8377655 Capsella rubella
Carub.0004s1328 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 8360658-8365657 Capsella rubella
Carub.0004s1328 5.0kb downstream 5.0kb downstream 16998 true scaffold_4: 8365658-8382655 Capsella rubella
Carub.0004s1328 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 8377656-8382655 Capsella rubella
Carub.0004s1328 10.0kb upstream 10.0kb upstream 21998 true scaffold_4: 8355658-8377655 Capsella rubella
Carub.0004s1328 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 8355658-8365657 Capsella rubella
Carub.0004s1328 10.0kb downstream 10.0kb downstream 21998 true scaffold_4: 8365658-8387655 Capsella rubella
Carub.0004s1328 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 8377656-8387655 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368152 5261 Brassicaceae View MSA
123839763 5264 Brassicales-Malvales View MSA
124346959 5266 SBM View MSA
124251802 5268 Malvidae View MSA
124072639 5270 Rosid View MSA
123745171 5271 Pentapetalae View MSA
122788947 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain