Gene : Carub.0004s1347 C. rubella v1.1
Defline:  (1 of 1) PTHR12725//PTHR12725:SF81 - HALOACID DEHALOGENASE-LIKE HYDROLASE // SUBFAMILY NOT NAMED Genomic Order:  1347
Name:  ? Carub.0004s1347 Secondary Identifier:  ? PAC:39236618
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7204 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s1347 0.5kb upstream 0.5kb upstream 2364 true scaffold_4: 8440354-8442717 Capsella rubella
Carub.0004s1347 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 8440354-8440853 Capsella rubella
Carub.0004s1347 0.5kb downstream 0.5kb downstream 2364 true scaffold_4: 8440854-8443217 Capsella rubella
Carub.0004s1347 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 8442718-8443217 Capsella rubella
Carub.0004s1347 1.0kb upstream 1.0kb upstream 2864 true scaffold_4: 8439854-8442717 Capsella rubella
Carub.0004s1347 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 8439854-8440853 Capsella rubella
Carub.0004s1347 1.0kb downstream 1.0kb downstream 2864 true scaffold_4: 8440854-8443717 Capsella rubella
Carub.0004s1347 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 8442718-8443717 Capsella rubella
Carub.0004s1347 2.0kb upstream 2.0kb upstream 3864 true scaffold_4: 8438854-8442717 Capsella rubella
Carub.0004s1347 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 8438854-8440853 Capsella rubella
Carub.0004s1347 2.0kb downstream 2.0kb downstream 3864 true scaffold_4: 8440854-8444717 Capsella rubella
Carub.0004s1347 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 8442718-8444717 Capsella rubella
Carub.0004s1347 5.0kb upstream 5.0kb upstream 6864 true scaffold_4: 8435854-8442717 Capsella rubella
Carub.0004s1347 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 8435854-8440853 Capsella rubella
Carub.0004s1347 5.0kb downstream 5.0kb downstream 6864 true scaffold_4: 8440854-8447717 Capsella rubella
Carub.0004s1347 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 8442718-8447717 Capsella rubella
Carub.0004s1347 10.0kb upstream 10.0kb upstream 11864 true scaffold_4: 8430854-8442717 Capsella rubella
Carub.0004s1347 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 8430854-8440853 Capsella rubella
Carub.0004s1347 10.0kb downstream 10.0kb downstream 11864 true scaffold_4: 8440854-8452717 Capsella rubella
Carub.0004s1347 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 8442718-8452717 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360172 5261 Brassicaceae View MSA
123829872 5264 Brassicales-Malvales View MSA
124339280 5266 SBM View MSA
124243356 5268 Malvidae View MSA
124062962 5270 Rosid View MSA
123740146 5271 Pentapetalae View MSA
122790968 5272 Eudicot View MSA
122048898 5273 Angiosperm View MSA
121311158 5274 Embryophyte View MSA
123426890 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain