Gene : Carub.0004s1217 C. rubella v1.1
Defline:  (1 of 2) PTHR23076//PTHR23076:SF60 - METALLOPROTEASE M41 FTSH // SUBFAMILY NOT NAMED Genomic Order:  1217
Name:  ? Carub.0004s1217 Secondary Identifier:  ? PAC:39237382
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s1217 0.5kb upstream 0.5kb upstream 3659 true scaffold_4: 7926296-7929954 Capsella rubella
Carub.0004s1217 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 7926296-7926795 Capsella rubella
Carub.0004s1217 0.5kb downstream 0.5kb downstream 3659 true scaffold_4: 7926796-7930454 Capsella rubella
Carub.0004s1217 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 7929955-7930454 Capsella rubella
Carub.0004s1217 1.0kb upstream 1.0kb upstream 4159 true scaffold_4: 7925796-7929954 Capsella rubella
Carub.0004s1217 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 7925796-7926795 Capsella rubella
Carub.0004s1217 1.0kb downstream 1.0kb downstream 4159 true scaffold_4: 7926796-7930954 Capsella rubella
Carub.0004s1217 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 7929955-7930954 Capsella rubella
Carub.0004s1217 2.0kb upstream 2.0kb upstream 5159 true scaffold_4: 7924796-7929954 Capsella rubella
Carub.0004s1217 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 7924796-7926795 Capsella rubella
Carub.0004s1217 2.0kb downstream 2.0kb downstream 5159 true scaffold_4: 7926796-7931954 Capsella rubella
Carub.0004s1217 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 7929955-7931954 Capsella rubella
Carub.0004s1217 5.0kb upstream 5.0kb upstream 8159 true scaffold_4: 7921796-7929954 Capsella rubella
Carub.0004s1217 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 7921796-7926795 Capsella rubella
Carub.0004s1217 5.0kb downstream 5.0kb downstream 8159 true scaffold_4: 7926796-7934954 Capsella rubella
Carub.0004s1217 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 7929955-7934954 Capsella rubella
Carub.0004s1217 10.0kb upstream 10.0kb upstream 13159 true scaffold_4: 7916796-7929954 Capsella rubella
Carub.0004s1217 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 7916796-7926795 Capsella rubella
Carub.0004s1217 10.0kb downstream 10.0kb downstream 13159 true scaffold_4: 7926796-7939954 Capsella rubella
Carub.0004s1217 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 7929955-7939954 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374340 5261 Brassicaceae View MSA
123839956 5264 Brassicales-Malvales View MSA
124341395 5266 SBM View MSA
124239029 5268 Malvidae View MSA
124067047 5270 Rosid View MSA
123736542 5271 Pentapetalae View MSA
122790199 5272 Eudicot View MSA
122046550 5273 Angiosperm View MSA
121351325 5274 Embryophyte View MSA
123426403 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain