Gene : Carub.0004s1543 C. rubella v1.1
Defline:  (1 of 34) PF05678 - VQ motif (VQ) Genomic Order:  1543
Name:  ? Carub.0004s1543 Secondary Identifier:  ? PAC:39235939
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s1543 0.5kb upstream 0.5kb upstream 1353 true scaffold_4: 9190057-9191409 Capsella rubella
Carub.0004s1543 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 9190910-9191409 Capsella rubella
Carub.0004s1543 0.5kb downstream 0.5kb downstream 1353 true scaffold_4: 9189557-9190909 Capsella rubella
Carub.0004s1543 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 9189557-9190056 Capsella rubella
Carub.0004s1543 1.0kb upstream 1.0kb upstream 1853 true scaffold_4: 9190057-9191909 Capsella rubella
Carub.0004s1543 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 9190910-9191909 Capsella rubella
Carub.0004s1543 1.0kb downstream 1.0kb downstream 1853 true scaffold_4: 9189057-9190909 Capsella rubella
Carub.0004s1543 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 9189057-9190056 Capsella rubella
Carub.0004s1543 2.0kb upstream 2.0kb upstream 2853 true scaffold_4: 9190057-9192909 Capsella rubella
Carub.0004s1543 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 9190910-9192909 Capsella rubella
Carub.0004s1543 2.0kb downstream 2.0kb downstream 2853 true scaffold_4: 9188057-9190909 Capsella rubella
Carub.0004s1543 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 9188057-9190056 Capsella rubella
Carub.0004s1543 5.0kb upstream 5.0kb upstream 5853 true scaffold_4: 9190057-9195909 Capsella rubella
Carub.0004s1543 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 9190910-9195909 Capsella rubella
Carub.0004s1543 5.0kb downstream 5.0kb downstream 5853 true scaffold_4: 9185057-9190909 Capsella rubella
Carub.0004s1543 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 9185057-9190056 Capsella rubella
Carub.0004s1543 10.0kb upstream 10.0kb upstream 10853 true scaffold_4: 9190057-9200909 Capsella rubella
Carub.0004s1543 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 9190910-9200909 Capsella rubella
Carub.0004s1543 10.0kb downstream 10.0kb downstream 10853 true scaffold_4: 9180057-9190909 Capsella rubella
Carub.0004s1543 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 9180057-9190056 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364846 5261 Brassicaceae View MSA
123798846 5264 Brassicales-Malvales View MSA
124296429 5266 SBM View MSA
124255645 5268 Malvidae View MSA
124073802 5270 Rosid View MSA
123750842 5271 Pentapetalae View MSA
122795090 5272 Eudicot View MSA
122046673 5273 Angiosperm View MSA
121347985 5274 Embryophyte View MSA
123380701 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain