Gene : Carub.0004s1525 C. rubella v1.1
Defline:  (1 of 1) PTHR31500:SF0 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN Genomic Order:  1525
Name:  ? Carub.0004s1525 Secondary Identifier:  ? PAC:39237756
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s1525 0.5kb upstream 0.5kb upstream 2972 true scaffold_4: 9127447-9130418 Capsella rubella
Carub.0004s1525 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 9127447-9127946 Capsella rubella
Carub.0004s1525 0.5kb downstream 0.5kb downstream 2972 true scaffold_4: 9127947-9130918 Capsella rubella
Carub.0004s1525 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 9130419-9130918 Capsella rubella
Carub.0004s1525 1.0kb upstream 1.0kb upstream 3472 true scaffold_4: 9126947-9130418 Capsella rubella
Carub.0004s1525 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 9126947-9127946 Capsella rubella
Carub.0004s1525 1.0kb downstream 1.0kb downstream 3472 true scaffold_4: 9127947-9131418 Capsella rubella
Carub.0004s1525 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 9130419-9131418 Capsella rubella
Carub.0004s1525 2.0kb upstream 2.0kb upstream 4472 true scaffold_4: 9125947-9130418 Capsella rubella
Carub.0004s1525 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 9125947-9127946 Capsella rubella
Carub.0004s1525 2.0kb downstream 2.0kb downstream 4472 true scaffold_4: 9127947-9132418 Capsella rubella
Carub.0004s1525 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 9130419-9132418 Capsella rubella
Carub.0004s1525 5.0kb upstream 5.0kb upstream 7472 true scaffold_4: 9122947-9130418 Capsella rubella
Carub.0004s1525 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 9122947-9127946 Capsella rubella
Carub.0004s1525 5.0kb downstream 5.0kb downstream 7472 true scaffold_4: 9127947-9135418 Capsella rubella
Carub.0004s1525 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 9130419-9135418 Capsella rubella
Carub.0004s1525 10.0kb upstream 10.0kb upstream 12472 true scaffold_4: 9117947-9130418 Capsella rubella
Carub.0004s1525 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 9117947-9127946 Capsella rubella
Carub.0004s1525 10.0kb downstream 10.0kb downstream 12472 true scaffold_4: 9127947-9140418 Capsella rubella
Carub.0004s1525 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 9130419-9140418 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377471 5261 Brassicaceae View MSA
123834471 5264 Brassicales-Malvales View MSA
124336935 5266 SBM View MSA
124238398 5268 Malvidae View MSA
124069070 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain