Gene : Carub.0004s1974 C. rubella v1.1
Defline:  (1 of 1) PTHR13871//PTHR13871:SF30 - THIOREDOXIN // CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN-RELATED Genomic Order:  1974
Name:  ? Carub.0004s1974 Secondary Identifier:  ? PAC:39236343
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7039 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s1974 0.5kb upstream 0.5kb upstream 1361 true scaffold_4: 10888748-10890108 Capsella rubella
Carub.0004s1974 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 10889609-10890108 Capsella rubella
Carub.0004s1974 0.5kb downstream 0.5kb downstream 1361 true scaffold_4: 10888248-10889608 Capsella rubella
Carub.0004s1974 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 10888248-10888747 Capsella rubella
Carub.0004s1974 1.0kb upstream 1.0kb upstream 1861 true scaffold_4: 10888748-10890608 Capsella rubella
Carub.0004s1974 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 10889609-10890608 Capsella rubella
Carub.0004s1974 1.0kb downstream 1.0kb downstream 1861 true scaffold_4: 10887748-10889608 Capsella rubella
Carub.0004s1974 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 10887748-10888747 Capsella rubella
Carub.0004s1974 2.0kb upstream 2.0kb upstream 2861 true scaffold_4: 10888748-10891608 Capsella rubella
Carub.0004s1974 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 10889609-10891608 Capsella rubella
Carub.0004s1974 2.0kb downstream 2.0kb downstream 2861 true scaffold_4: 10886748-10889608 Capsella rubella
Carub.0004s1974 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 10886748-10888747 Capsella rubella
Carub.0004s1974 5.0kb upstream 5.0kb upstream 5861 true scaffold_4: 10888748-10894608 Capsella rubella
Carub.0004s1974 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 10889609-10894608 Capsella rubella
Carub.0004s1974 5.0kb downstream 5.0kb downstream 5861 true scaffold_4: 10883748-10889608 Capsella rubella
Carub.0004s1974 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 10883748-10888747 Capsella rubella
Carub.0004s1974 10.0kb upstream 10.0kb upstream 10861 true scaffold_4: 10888748-10899608 Capsella rubella
Carub.0004s1974 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 10889609-10899608 Capsella rubella
Carub.0004s1974 10.0kb downstream 10.0kb downstream 10861 true scaffold_4: 10878748-10889608 Capsella rubella
Carub.0004s1974 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 10878748-10888747 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378729 5261 Brassicaceae View MSA
123836958 5264 Brassicales-Malvales View MSA
124322230 5266 SBM View MSA
124248572 5268 Malvidae View MSA
124074302 5270 Rosid View MSA
123750493 5271 Pentapetalae View MSA
122796546 5272 Eudicot View MSA
122051127 5273 Angiosperm View MSA
121351229 5274 Embryophyte View MSA
123382066 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain