Gene : Carub.0004s2017 C. rubella v1.1
Defline:  (1 of 3) PTHR12183:SF16 - PROTEIN ABERRANT POLLEN DEVELOPMENT 1-RELATED Genomic Order:  2017
Name:  ? Carub.0004s2017 Secondary Identifier:  ? PAC:39237645
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2017 0.5kb upstream 0.5kb upstream 3179 true scaffold_4: 11062243-11065421 Capsella rubella
Carub.0004s2017 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 11062243-11062742 Capsella rubella
Carub.0004s2017 0.5kb downstream 0.5kb downstream 3179 true scaffold_4: 11062743-11065921 Capsella rubella
Carub.0004s2017 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 11065422-11065921 Capsella rubella
Carub.0004s2017 1.0kb upstream 1.0kb upstream 3679 true scaffold_4: 11061743-11065421 Capsella rubella
Carub.0004s2017 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 11061743-11062742 Capsella rubella
Carub.0004s2017 1.0kb downstream 1.0kb downstream 3679 true scaffold_4: 11062743-11066421 Capsella rubella
Carub.0004s2017 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 11065422-11066421 Capsella rubella
Carub.0004s2017 2.0kb upstream 2.0kb upstream 4679 true scaffold_4: 11060743-11065421 Capsella rubella
Carub.0004s2017 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 11060743-11062742 Capsella rubella
Carub.0004s2017 2.0kb downstream 2.0kb downstream 4679 true scaffold_4: 11062743-11067421 Capsella rubella
Carub.0004s2017 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 11065422-11067421 Capsella rubella
Carub.0004s2017 5.0kb upstream 5.0kb upstream 7679 true scaffold_4: 11057743-11065421 Capsella rubella
Carub.0004s2017 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 11057743-11062742 Capsella rubella
Carub.0004s2017 5.0kb downstream 5.0kb downstream 7679 true scaffold_4: 11062743-11070421 Capsella rubella
Carub.0004s2017 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 11065422-11070421 Capsella rubella
Carub.0004s2017 10.0kb upstream 10.0kb upstream 12679 true scaffold_4: 11052743-11065421 Capsella rubella
Carub.0004s2017 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 11052743-11062742 Capsella rubella
Carub.0004s2017 10.0kb downstream 10.0kb downstream 12679 true scaffold_4: 11062743-11075421 Capsella rubella
Carub.0004s2017 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 11065422-11075421 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122792833 5272 Eudicot View MSA
122376606 5261 Brassicaceae View MSA
123838874 5264 Brassicales-Malvales View MSA
124344193 5266 SBM View MSA
124250832 5268 Malvidae View MSA
124070780 5270 Rosid View MSA
123741557 5271 Pentapetalae View MSA
122042274 5273 Angiosperm View MSA
121349312 5274 Embryophyte View MSA
123381271 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain