Gene : Carub.0004s2298 C. rubella v1.1
Defline:  (1 of 1) PTHR11728//PTHR11728:SF13 - GLYCEROL-3-PHOSPHATE DEHYDROGENASE // GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(+)] 2, CHLOROPLASTIC Genomic Order:  2298
Name:  ? Carub.0004s2298 Secondary Identifier:  ? PAC:39237597
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6118 Capsella rubella pathologic  
Crubella PWY-7411 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2298 0.5kb upstream 0.5kb upstream 2933 true scaffold_4: 12120297-12123229 Capsella rubella
Carub.0004s2298 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 12120297-12120796 Capsella rubella
Carub.0004s2298 0.5kb downstream 0.5kb downstream 2933 true scaffold_4: 12120797-12123729 Capsella rubella
Carub.0004s2298 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 12123230-12123729 Capsella rubella
Carub.0004s2298 1.0kb upstream 1.0kb upstream 3433 true scaffold_4: 12119797-12123229 Capsella rubella
Carub.0004s2298 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 12119797-12120796 Capsella rubella
Carub.0004s2298 1.0kb downstream 1.0kb downstream 3433 true scaffold_4: 12120797-12124229 Capsella rubella
Carub.0004s2298 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 12123230-12124229 Capsella rubella
Carub.0004s2298 2.0kb upstream 2.0kb upstream 4433 true scaffold_4: 12118797-12123229 Capsella rubella
Carub.0004s2298 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 12118797-12120796 Capsella rubella
Carub.0004s2298 2.0kb downstream 2.0kb downstream 4433 true scaffold_4: 12120797-12125229 Capsella rubella
Carub.0004s2298 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 12123230-12125229 Capsella rubella
Carub.0004s2298 5.0kb upstream 5.0kb upstream 7433 true scaffold_4: 12115797-12123229 Capsella rubella
Carub.0004s2298 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 12115797-12120796 Capsella rubella
Carub.0004s2298 5.0kb downstream 5.0kb downstream 7433 true scaffold_4: 12120797-12128229 Capsella rubella
Carub.0004s2298 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 12123230-12128229 Capsella rubella
Carub.0004s2298 10.0kb upstream 10.0kb upstream 12433 true scaffold_4: 12110797-12123229 Capsella rubella
Carub.0004s2298 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 12110797-12120796 Capsella rubella
Carub.0004s2298 10.0kb downstream 10.0kb downstream 12433 true scaffold_4: 12120797-12133229 Capsella rubella
Carub.0004s2298 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 12123230-12133229 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370506 5261 Brassicaceae View MSA
123834500 5264 Brassicales-Malvales View MSA
124342001 5266 SBM View MSA
124238702 5268 Malvidae View MSA
124071828 5270 Rosid View MSA
123739883 5271 Pentapetalae View MSA
122793723 5272 Eudicot View MSA
122048104 5273 Angiosperm View MSA
121348116 5274 Embryophyte View MSA
123428470 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain