Gene : Carub.0004s2102 C. rubella v1.1
Defline:  (1 of 4) PTHR31650:SF1 - EMB|CAB66399.1-RELATED Genomic Order:  2102
Name:  ? Carub.0004s2102 Secondary Identifier:  ? PAC:39239036
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5885 Capsella rubella pathologic  
Crubella TRIGLSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2102 0.5kb upstream 0.5kb upstream 2948 true scaffold_4: 11360959-11363906 Capsella rubella
Carub.0004s2102 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 11360959-11361458 Capsella rubella
Carub.0004s2102 0.5kb downstream 0.5kb downstream 2948 true scaffold_4: 11361459-11364406 Capsella rubella
Carub.0004s2102 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 11363907-11364406 Capsella rubella
Carub.0004s2102 1.0kb upstream 1.0kb upstream 3448 true scaffold_4: 11360459-11363906 Capsella rubella
Carub.0004s2102 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 11360459-11361458 Capsella rubella
Carub.0004s2102 1.0kb downstream 1.0kb downstream 3448 true scaffold_4: 11361459-11364906 Capsella rubella
Carub.0004s2102 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 11363907-11364906 Capsella rubella
Carub.0004s2102 2.0kb upstream 2.0kb upstream 4448 true scaffold_4: 11359459-11363906 Capsella rubella
Carub.0004s2102 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 11359459-11361458 Capsella rubella
Carub.0004s2102 2.0kb downstream 2.0kb downstream 4448 true scaffold_4: 11361459-11365906 Capsella rubella
Carub.0004s2102 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 11363907-11365906 Capsella rubella
Carub.0004s2102 5.0kb upstream 5.0kb upstream 7448 true scaffold_4: 11356459-11363906 Capsella rubella
Carub.0004s2102 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 11356459-11361458 Capsella rubella
Carub.0004s2102 5.0kb downstream 5.0kb downstream 7448 true scaffold_4: 11361459-11368906 Capsella rubella
Carub.0004s2102 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 11363907-11368906 Capsella rubella
Carub.0004s2102 10.0kb upstream 10.0kb upstream 12448 true scaffold_4: 11351459-11363906 Capsella rubella
Carub.0004s2102 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 11351459-11361458 Capsella rubella
Carub.0004s2102 10.0kb downstream 10.0kb downstream 12448 true scaffold_4: 11361459-11373906 Capsella rubella
Carub.0004s2102 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 11363907-11373906 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381552 5261 Brassicaceae View MSA
123803305 5264 Brassicales-Malvales View MSA
124300422 5266 SBM View MSA
124151609 5268 Malvidae View MSA
124072353 5270 Rosid View MSA
123749646 5271 Pentapetalae View MSA
122794217 5272 Eudicot View MSA
122046091 5273 Angiosperm View MSA
123428993 5275 Viridiplantae View MSA
121351027 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain