Gene : Carub.0004s2096 C. rubella v1.1
Defline:  (1 of 2) K16275 - E3 ubiquitin-protein ligase BAH [EC:6.3.2.19] (BAH, NLA) Genomic Order:  2096
Name:  ? Carub.0004s2096 Secondary Identifier:  ? PAC:39236952
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2096 0.5kb upstream 0.5kb upstream 2378 true scaffold_4: 11328058-11330435 Capsella rubella
Carub.0004s2096 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 11329936-11330435 Capsella rubella
Carub.0004s2096 0.5kb downstream 0.5kb downstream 2378 true scaffold_4: 11327558-11329935 Capsella rubella
Carub.0004s2096 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 11327558-11328057 Capsella rubella
Carub.0004s2096 1.0kb upstream 1.0kb upstream 2878 true scaffold_4: 11328058-11330935 Capsella rubella
Carub.0004s2096 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 11329936-11330935 Capsella rubella
Carub.0004s2096 1.0kb downstream 1.0kb downstream 2878 true scaffold_4: 11327058-11329935 Capsella rubella
Carub.0004s2096 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 11327058-11328057 Capsella rubella
Carub.0004s2096 2.0kb upstream 2.0kb upstream 3878 true scaffold_4: 11328058-11331935 Capsella rubella
Carub.0004s2096 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 11329936-11331935 Capsella rubella
Carub.0004s2096 2.0kb downstream 2.0kb downstream 3878 true scaffold_4: 11326058-11329935 Capsella rubella
Carub.0004s2096 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 11326058-11328057 Capsella rubella
Carub.0004s2096 5.0kb upstream 5.0kb upstream 6878 true scaffold_4: 11328058-11334935 Capsella rubella
Carub.0004s2096 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 11329936-11334935 Capsella rubella
Carub.0004s2096 5.0kb downstream 5.0kb downstream 6878 true scaffold_4: 11323058-11329935 Capsella rubella
Carub.0004s2096 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 11323058-11328057 Capsella rubella
Carub.0004s2096 10.0kb upstream 10.0kb upstream 11878 true scaffold_4: 11328058-11339935 Capsella rubella
Carub.0004s2096 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 11329936-11339935 Capsella rubella
Carub.0004s2096 10.0kb downstream 10.0kb downstream 11878 true scaffold_4: 11318058-11329935 Capsella rubella
Carub.0004s2096 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 11318058-11328057 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379567 5261 Brassicaceae View MSA
123831644 5264 Brassicales-Malvales View MSA
124345582 5266 SBM View MSA
124240285 5268 Malvidae View MSA
124061797 5270 Rosid View MSA
123736545 5271 Pentapetalae View MSA
122788039 5272 Eudicot View MSA
122046768 5273 Angiosperm View MSA
121350146 5274 Embryophyte View MSA
123425854 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain