Gene : Carub.0004s2523 C. rubella v1.1
Defline:  (1 of 4) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Genomic Order:  2523
Name:  ? Carub.0004s2523 Secondary Identifier:  ? PAC:39237578
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLYOXYLATE-BYPASS Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY-561 Capsella rubella pathologic  
Crubella PWY-5690 Capsella rubella pathologic  
Crubella PWY-6549 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2523 0.5kb upstream 0.5kb upstream 3757 true scaffold_4: 12977095-12980851 Capsella rubella
Carub.0004s2523 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 12980352-12980851 Capsella rubella
Carub.0004s2523 0.5kb downstream 0.5kb downstream 3757 true scaffold_4: 12976595-12980351 Capsella rubella
Carub.0004s2523 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 12976595-12977094 Capsella rubella
Carub.0004s2523 1.0kb upstream 1.0kb upstream 4257 true scaffold_4: 12977095-12981351 Capsella rubella
Carub.0004s2523 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 12980352-12981351 Capsella rubella
Carub.0004s2523 1.0kb downstream 1.0kb downstream 4257 true scaffold_4: 12976095-12980351 Capsella rubella
Carub.0004s2523 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 12976095-12977094 Capsella rubella
Carub.0004s2523 2.0kb upstream 2.0kb upstream 5257 true scaffold_4: 12977095-12982351 Capsella rubella
Carub.0004s2523 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 12980352-12982351 Capsella rubella
Carub.0004s2523 2.0kb downstream 2.0kb downstream 5257 true scaffold_4: 12975095-12980351 Capsella rubella
Carub.0004s2523 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 12975095-12977094 Capsella rubella
Carub.0004s2523 5.0kb upstream 5.0kb upstream 8257 true scaffold_4: 12977095-12985351 Capsella rubella
Carub.0004s2523 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 12980352-12985351 Capsella rubella
Carub.0004s2523 5.0kb downstream 5.0kb downstream 8257 true scaffold_4: 12972095-12980351 Capsella rubella
Carub.0004s2523 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 12972095-12977094 Capsella rubella
Carub.0004s2523 10.0kb upstream 10.0kb upstream 13257 true scaffold_4: 12977095-12990351 Capsella rubella
Carub.0004s2523 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 12980352-12990351 Capsella rubella
Carub.0004s2523 10.0kb downstream 10.0kb downstream 13257 true scaffold_4: 12967095-12980351 Capsella rubella
Carub.0004s2523 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 12967095-12977094 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379222 5261 Brassicaceae View MSA
123836656 5264 Brassicales-Malvales View MSA
124345629 5266 SBM View MSA
124251480 5268 Malvidae View MSA
124065792 5270 Rosid View MSA
123748183 5271 Pentapetalae View MSA
122794190 5272 Eudicot View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain