Gene : Carub.0004s2557 C. rubella v1.1
Defline:  (1 of 5) K01704 - 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit (leuD) Genomic Order:  2557
Name:  ? Carub.0004s2557 Secondary Identifier:  ? PAC:39236373
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella BRANCHED-CHAIN-AA-SYN-PWY Capsella rubella pathologic  
Crubella LEUSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2557 0.5kb upstream 0.5kb upstream 2176 true scaffold_4: 13104436-13106611 Capsella rubella
Carub.0004s2557 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 13104436-13104935 Capsella rubella
Carub.0004s2557 0.5kb downstream 0.5kb downstream 2176 true scaffold_4: 13104936-13107111 Capsella rubella
Carub.0004s2557 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 13106612-13107111 Capsella rubella
Carub.0004s2557 1.0kb upstream 1.0kb upstream 2676 true scaffold_4: 13103936-13106611 Capsella rubella
Carub.0004s2557 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 13103936-13104935 Capsella rubella
Carub.0004s2557 1.0kb downstream 1.0kb downstream 2676 true scaffold_4: 13104936-13107611 Capsella rubella
Carub.0004s2557 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 13106612-13107611 Capsella rubella
Carub.0004s2557 2.0kb upstream 2.0kb upstream 3676 true scaffold_4: 13102936-13106611 Capsella rubella
Carub.0004s2557 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 13102936-13104935 Capsella rubella
Carub.0004s2557 2.0kb downstream 2.0kb downstream 3676 true scaffold_4: 13104936-13108611 Capsella rubella
Carub.0004s2557 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 13106612-13108611 Capsella rubella
Carub.0004s2557 5.0kb upstream 5.0kb upstream 6676 true scaffold_4: 13099936-13106611 Capsella rubella
Carub.0004s2557 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 13099936-13104935 Capsella rubella
Carub.0004s2557 5.0kb downstream 5.0kb downstream 6676 true scaffold_4: 13104936-13111611 Capsella rubella
Carub.0004s2557 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 13106612-13111611 Capsella rubella
Carub.0004s2557 10.0kb upstream 10.0kb upstream 11676 true scaffold_4: 13094936-13106611 Capsella rubella
Carub.0004s2557 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 13094936-13104935 Capsella rubella
Carub.0004s2557 10.0kb downstream 10.0kb downstream 11676 true scaffold_4: 13104936-13116611 Capsella rubella
Carub.0004s2557 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 13106612-13116611 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040980 5273 Angiosperm View MSA
122362047 5261 Brassicaceae View MSA
123839118 5264 Brassicales-Malvales View MSA
124338093 5266 SBM View MSA
124250878 5268 Malvidae View MSA
124068442 5270 Rosid View MSA
123736502 5271 Pentapetalae View MSA
122789957 5272 Eudicot View MSA
121345878 5274 Embryophyte View MSA
123423763 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain