Gene : Carub.0004s2344 C. rubella v1.1
Defline:  (1 of 2) PTHR12565//PTHR12565:SF158 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BHLH106-RELATED Genomic Order:  2344
Name:  ? Carub.0004s2344 Secondary Identifier:  ? PAC:39238581
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2344 0.5kb upstream 0.5kb upstream 2050 true scaffold_4: 12289923-12291972 Capsella rubella
Carub.0004s2344 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 12289923-12290422 Capsella rubella
Carub.0004s2344 0.5kb downstream 0.5kb downstream 2050 true scaffold_4: 12290423-12292472 Capsella rubella
Carub.0004s2344 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 12291973-12292472 Capsella rubella
Carub.0004s2344 1.0kb upstream 1.0kb upstream 2550 true scaffold_4: 12289423-12291972 Capsella rubella
Carub.0004s2344 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 12289423-12290422 Capsella rubella
Carub.0004s2344 1.0kb downstream 1.0kb downstream 2550 true scaffold_4: 12290423-12292972 Capsella rubella
Carub.0004s2344 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 12291973-12292972 Capsella rubella
Carub.0004s2344 2.0kb upstream 2.0kb upstream 3550 true scaffold_4: 12288423-12291972 Capsella rubella
Carub.0004s2344 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 12288423-12290422 Capsella rubella
Carub.0004s2344 2.0kb downstream 2.0kb downstream 3550 true scaffold_4: 12290423-12293972 Capsella rubella
Carub.0004s2344 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 12291973-12293972 Capsella rubella
Carub.0004s2344 5.0kb upstream 5.0kb upstream 6550 true scaffold_4: 12285423-12291972 Capsella rubella
Carub.0004s2344 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 12285423-12290422 Capsella rubella
Carub.0004s2344 5.0kb downstream 5.0kb downstream 6550 true scaffold_4: 12290423-12296972 Capsella rubella
Carub.0004s2344 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 12291973-12296972 Capsella rubella
Carub.0004s2344 10.0kb upstream 10.0kb upstream 11550 true scaffold_4: 12280423-12291972 Capsella rubella
Carub.0004s2344 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 12280423-12290422 Capsella rubella
Carub.0004s2344 10.0kb downstream 10.0kb downstream 11550 true scaffold_4: 12290423-12301972 Capsella rubella
Carub.0004s2344 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 12291973-12301972 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360906 5261 Brassicaceae View MSA
123828215 5264 Brassicales-Malvales View MSA
124351340 5266 SBM View MSA
124245665 5268 Malvidae View MSA
124070702 5270 Rosid View MSA
123748515 5271 Pentapetalae View MSA
122793981 5272 Eudicot View MSA
122048947 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain