Gene : Carub.0004s2383 C. rubella v1.1
Defline:  (1 of 2) PTHR11728:SF17 - 6-PHOSPHOGLUCONATE DEHYDROGENASE-LIKE PROTEIN Genomic Order:  2383
Name:  ? Carub.0004s2383 Secondary Identifier:  ? PAC:39237314
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6118 Capsella rubella pathologic  
Crubella PWY-7411 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2383 0.5kb upstream 0.5kb upstream 2707 true scaffold_4: 12455500-12458206 Capsella rubella
Carub.0004s2383 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 12455500-12455999 Capsella rubella
Carub.0004s2383 0.5kb downstream 0.5kb downstream 2707 true scaffold_4: 12456000-12458706 Capsella rubella
Carub.0004s2383 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 12458207-12458706 Capsella rubella
Carub.0004s2383 1.0kb upstream 1.0kb upstream 3207 true scaffold_4: 12455000-12458206 Capsella rubella
Carub.0004s2383 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 12455000-12455999 Capsella rubella
Carub.0004s2383 1.0kb downstream 1.0kb downstream 3207 true scaffold_4: 12456000-12459206 Capsella rubella
Carub.0004s2383 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 12458207-12459206 Capsella rubella
Carub.0004s2383 2.0kb upstream 2.0kb upstream 4207 true scaffold_4: 12454000-12458206 Capsella rubella
Carub.0004s2383 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 12454000-12455999 Capsella rubella
Carub.0004s2383 2.0kb downstream 2.0kb downstream 4207 true scaffold_4: 12456000-12460206 Capsella rubella
Carub.0004s2383 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 12458207-12460206 Capsella rubella
Carub.0004s2383 5.0kb upstream 5.0kb upstream 7207 true scaffold_4: 12451000-12458206 Capsella rubella
Carub.0004s2383 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 12451000-12455999 Capsella rubella
Carub.0004s2383 5.0kb downstream 5.0kb downstream 7207 true scaffold_4: 12456000-12463206 Capsella rubella
Carub.0004s2383 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 12458207-12463206 Capsella rubella
Carub.0004s2383 10.0kb upstream 10.0kb upstream 12207 true scaffold_4: 12446000-12458206 Capsella rubella
Carub.0004s2383 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 12446000-12455999 Capsella rubella
Carub.0004s2383 10.0kb downstream 10.0kb downstream 12207 true scaffold_4: 12456000-12468206 Capsella rubella
Carub.0004s2383 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 12458207-12468206 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362539 5261 Brassicaceae View MSA
123840011 5264 Brassicales-Malvales View MSA
124343706 5266 SBM View MSA
124251382 5268 Malvidae View MSA
124069658 5270 Rosid View MSA
123738520 5271 Pentapetalae View MSA
122790520 5272 Eudicot View MSA
122046820 5273 Angiosperm View MSA
121349677 5274 Embryophyte View MSA
123381397 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain