Gene : Carub.0004s2793 C. rubella v1.1
Defline:  (1 of 1) 2.5.1.19 - 3-phosphoshikimate 1-carboxyvinyltransferase / EPSP synthase Genomic Order:  2793
Name:  ? Carub.0004s2793 Secondary Identifier:  ? PAC:39238495
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ARO-PWY Capsella rubella pathologic  
Crubella PWY-6163 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2793 0.5kb upstream 0.5kb upstream 3235 true scaffold_4: 13908277-13911511 Capsella rubella
Carub.0004s2793 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 13908277-13908776 Capsella rubella
Carub.0004s2793 0.5kb downstream 0.5kb downstream 3235 true scaffold_4: 13908777-13912011 Capsella rubella
Carub.0004s2793 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 13911512-13912011 Capsella rubella
Carub.0004s2793 1.0kb upstream 1.0kb upstream 3735 true scaffold_4: 13907777-13911511 Capsella rubella
Carub.0004s2793 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 13907777-13908776 Capsella rubella
Carub.0004s2793 1.0kb downstream 1.0kb downstream 3735 true scaffold_4: 13908777-13912511 Capsella rubella
Carub.0004s2793 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 13911512-13912511 Capsella rubella
Carub.0004s2793 2.0kb upstream 2.0kb upstream 4735 true scaffold_4: 13906777-13911511 Capsella rubella
Carub.0004s2793 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 13906777-13908776 Capsella rubella
Carub.0004s2793 2.0kb downstream 2.0kb downstream 4735 true scaffold_4: 13908777-13913511 Capsella rubella
Carub.0004s2793 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 13911512-13913511 Capsella rubella
Carub.0004s2793 5.0kb upstream 5.0kb upstream 7735 true scaffold_4: 13903777-13911511 Capsella rubella
Carub.0004s2793 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 13903777-13908776 Capsella rubella
Carub.0004s2793 5.0kb downstream 5.0kb downstream 7735 true scaffold_4: 13908777-13916511 Capsella rubella
Carub.0004s2793 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 13911512-13916511 Capsella rubella
Carub.0004s2793 10.0kb upstream 10.0kb upstream 12735 true scaffold_4: 13898777-13911511 Capsella rubella
Carub.0004s2793 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 13898777-13908776 Capsella rubella
Carub.0004s2793 10.0kb downstream 10.0kb downstream 12735 true scaffold_4: 13908777-13921511 Capsella rubella
Carub.0004s2793 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 13911512-13921511 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374730 5261 Brassicaceae View MSA
123838473 5264 Brassicales-Malvales View MSA
124341976 5266 SBM View MSA
124237707 5268 Malvidae View MSA
124067523 5270 Rosid View MSA
123738347 5271 Pentapetalae View MSA
122792138 5272 Eudicot View MSA
122041964 5273 Angiosperm View MSA
121345789 5274 Embryophyte View MSA
123424749 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain