Gene : Carub.0004s2580 C. rubella v1.1
Defline:  (1 of 13) PF07939 - Protein of unknown function (DUF1685) (DUF1685) Genomic Order:  2580
Name:  ? Carub.0004s2580 Secondary Identifier:  ? PAC:39238803
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2580 0.5kb upstream 0.5kb upstream 1700 true scaffold_4: 13198936-13200635 Capsella rubella
Carub.0004s2580 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 13198936-13199435 Capsella rubella
Carub.0004s2580 0.5kb downstream 0.5kb downstream 1700 true scaffold_4: 13199436-13201135 Capsella rubella
Carub.0004s2580 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 13200636-13201135 Capsella rubella
Carub.0004s2580 1.0kb upstream 1.0kb upstream 2200 true scaffold_4: 13198436-13200635 Capsella rubella
Carub.0004s2580 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 13198436-13199435 Capsella rubella
Carub.0004s2580 1.0kb downstream 1.0kb downstream 2200 true scaffold_4: 13199436-13201635 Capsella rubella
Carub.0004s2580 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 13200636-13201635 Capsella rubella
Carub.0004s2580 2.0kb upstream 2.0kb upstream 3200 true scaffold_4: 13197436-13200635 Capsella rubella
Carub.0004s2580 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 13197436-13199435 Capsella rubella
Carub.0004s2580 2.0kb downstream 2.0kb downstream 3200 true scaffold_4: 13199436-13202635 Capsella rubella
Carub.0004s2580 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 13200636-13202635 Capsella rubella
Carub.0004s2580 5.0kb upstream 5.0kb upstream 6200 true scaffold_4: 13194436-13200635 Capsella rubella
Carub.0004s2580 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 13194436-13199435 Capsella rubella
Carub.0004s2580 5.0kb downstream 5.0kb downstream 6200 true scaffold_4: 13199436-13205635 Capsella rubella
Carub.0004s2580 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 13200636-13205635 Capsella rubella
Carub.0004s2580 10.0kb upstream 10.0kb upstream 11200 true scaffold_4: 13189436-13200635 Capsella rubella
Carub.0004s2580 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 13189436-13199435 Capsella rubella
Carub.0004s2580 10.0kb downstream 10.0kb downstream 11200 true scaffold_4: 13199436-13210635 Capsella rubella
Carub.0004s2580 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 13200636-13210635 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381605 5261 Brassicaceae View MSA
123837386 5264 Brassicales-Malvales View MSA
124350178 5266 SBM View MSA
124242501 5268 Malvidae View MSA
124067258 5270 Rosid View MSA
123744509 5271 Pentapetalae View MSA
122793651 5272 Eudicot View MSA
122045124 5273 Angiosperm View MSA
121348379 5274 Embryophyte View MSA
123380837 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain