Gene : Carub.0004s2628 C. rubella v1.1
Defline:  (1 of 2) PTHR10314:SF110 - CYSTEINE SYNTHASE Genomic Order:  2628
Name:  ? Carub.0004s2628 Secondary Identifier:  ? PAC:39238391
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella CYSTSYN-PWY Capsella rubella pathologic  
Crubella PWY-6936 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2628 0.5kb upstream 0.5kb upstream 3360 true scaffold_4: 13337427-13340786 Capsella rubella
Carub.0004s2628 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 13340287-13340786 Capsella rubella
Carub.0004s2628 0.5kb downstream 0.5kb downstream 3360 true scaffold_4: 13336927-13340286 Capsella rubella
Carub.0004s2628 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 13336927-13337426 Capsella rubella
Carub.0004s2628 1.0kb upstream 1.0kb upstream 3860 true scaffold_4: 13337427-13341286 Capsella rubella
Carub.0004s2628 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 13340287-13341286 Capsella rubella
Carub.0004s2628 1.0kb downstream 1.0kb downstream 3860 true scaffold_4: 13336427-13340286 Capsella rubella
Carub.0004s2628 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 13336427-13337426 Capsella rubella
Carub.0004s2628 2.0kb upstream 2.0kb upstream 4860 true scaffold_4: 13337427-13342286 Capsella rubella
Carub.0004s2628 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 13340287-13342286 Capsella rubella
Carub.0004s2628 2.0kb downstream 2.0kb downstream 4860 true scaffold_4: 13335427-13340286 Capsella rubella
Carub.0004s2628 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 13335427-13337426 Capsella rubella
Carub.0004s2628 5.0kb upstream 5.0kb upstream 7860 true scaffold_4: 13337427-13345286 Capsella rubella
Carub.0004s2628 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 13340287-13345286 Capsella rubella
Carub.0004s2628 5.0kb downstream 5.0kb downstream 7860 true scaffold_4: 13332427-13340286 Capsella rubella
Carub.0004s2628 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 13332427-13337426 Capsella rubella
Carub.0004s2628 10.0kb upstream 10.0kb upstream 12860 true scaffold_4: 13337427-13350286 Capsella rubella
Carub.0004s2628 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 13340287-13350286 Capsella rubella
Carub.0004s2628 10.0kb downstream 10.0kb downstream 12860 true scaffold_4: 13327427-13340286 Capsella rubella
Carub.0004s2628 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 13327427-13337426 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377220 5261 Brassicaceae View MSA
123838792 5264 Brassicales-Malvales View MSA
124340029 5266 SBM View MSA
124241185 5268 Malvidae View MSA
124068226 5270 Rosid View MSA
123737517 5271 Pentapetalae View MSA
122787269 5272 Eudicot View MSA
122042312 5273 Angiosperm View MSA
121350970 5274 Embryophyte View MSA
123424805 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain