Gene : Carub.0004s2642 C. rubella v1.1
Defline:  (1 of 2) PTHR31375:SF18 - POLYGALACTURONASE-RELATED Genomic Order:  2642
Name:  ? Carub.0004s2642 Secondary Identifier:  ? PAC:39239054
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2642 0.5kb upstream 0.5kb upstream 1944 true scaffold_4: 13381717-13383660 Capsella rubella
Carub.0004s2642 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 13381717-13382216 Capsella rubella
Carub.0004s2642 0.5kb downstream 0.5kb downstream 1944 true scaffold_4: 13382217-13384160 Capsella rubella
Carub.0004s2642 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 13383661-13384160 Capsella rubella
Carub.0004s2642 1.0kb upstream 1.0kb upstream 2444 true scaffold_4: 13381217-13383660 Capsella rubella
Carub.0004s2642 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 13381217-13382216 Capsella rubella
Carub.0004s2642 1.0kb downstream 1.0kb downstream 2444 true scaffold_4: 13382217-13384660 Capsella rubella
Carub.0004s2642 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 13383661-13384660 Capsella rubella
Carub.0004s2642 2.0kb upstream 2.0kb upstream 3444 true scaffold_4: 13380217-13383660 Capsella rubella
Carub.0004s2642 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 13380217-13382216 Capsella rubella
Carub.0004s2642 2.0kb downstream 2.0kb downstream 3444 true scaffold_4: 13382217-13385660 Capsella rubella
Carub.0004s2642 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 13383661-13385660 Capsella rubella
Carub.0004s2642 5.0kb upstream 5.0kb upstream 6444 true scaffold_4: 13377217-13383660 Capsella rubella
Carub.0004s2642 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 13377217-13382216 Capsella rubella
Carub.0004s2642 5.0kb downstream 5.0kb downstream 6444 true scaffold_4: 13382217-13388660 Capsella rubella
Carub.0004s2642 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 13383661-13388660 Capsella rubella
Carub.0004s2642 10.0kb upstream 10.0kb upstream 11444 true scaffold_4: 13372217-13383660 Capsella rubella
Carub.0004s2642 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 13372217-13382216 Capsella rubella
Carub.0004s2642 10.0kb downstream 10.0kb downstream 11444 true scaffold_4: 13382217-13393660 Capsella rubella
Carub.0004s2642 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 13383661-13393660 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367803 5261 Brassicaceae View MSA
123799425 5264 Brassicales-Malvales View MSA
124296947 5266 SBM View MSA
124243771 5268 Malvidae View MSA
124074410 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain