Gene : Carub.0004s2641 C. rubella v1.1
Defline:  (1 of 3) PTHR31375//PTHR31375:SF2 - FAMILY NOT NAMED // POLYGALACTURONASE/PECTINASE Genomic Order:  2641
Name:  ? Carub.0004s2641 Secondary Identifier:  ? PAC:39237603
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2641 0.5kb upstream 0.5kb upstream 2496 true scaffold_4: 13375978-13378473 Capsella rubella
Carub.0004s2641 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 13377974-13378473 Capsella rubella
Carub.0004s2641 0.5kb downstream 0.5kb downstream 2496 true scaffold_4: 13375478-13377973 Capsella rubella
Carub.0004s2641 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 13375478-13375977 Capsella rubella
Carub.0004s2641 1.0kb upstream 1.0kb upstream 2996 true scaffold_4: 13375978-13378973 Capsella rubella
Carub.0004s2641 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 13377974-13378973 Capsella rubella
Carub.0004s2641 1.0kb downstream 1.0kb downstream 2996 true scaffold_4: 13374978-13377973 Capsella rubella
Carub.0004s2641 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 13374978-13375977 Capsella rubella
Carub.0004s2641 2.0kb upstream 2.0kb upstream 3996 true scaffold_4: 13375978-13379973 Capsella rubella
Carub.0004s2641 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 13377974-13379973 Capsella rubella
Carub.0004s2641 2.0kb downstream 2.0kb downstream 3996 true scaffold_4: 13373978-13377973 Capsella rubella
Carub.0004s2641 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 13373978-13375977 Capsella rubella
Carub.0004s2641 5.0kb upstream 5.0kb upstream 6996 true scaffold_4: 13375978-13382973 Capsella rubella
Carub.0004s2641 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 13377974-13382973 Capsella rubella
Carub.0004s2641 5.0kb downstream 5.0kb downstream 6996 true scaffold_4: 13370978-13377973 Capsella rubella
Carub.0004s2641 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 13370978-13375977 Capsella rubella
Carub.0004s2641 10.0kb upstream 10.0kb upstream 11996 true scaffold_4: 13375978-13387973 Capsella rubella
Carub.0004s2641 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 13377974-13387973 Capsella rubella
Carub.0004s2641 10.0kb downstream 10.0kb downstream 11996 true scaffold_4: 13365978-13377973 Capsella rubella
Carub.0004s2641 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 13365978-13375977 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366380 5261 Brassicaceae View MSA
123837359 5264 Brassicales-Malvales View MSA
124322295 5266 SBM View MSA
124252972 5268 Malvidae View MSA
124060937 5270 Rosid View MSA
123747300 5271 Pentapetalae View MSA
122794998 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain