Gene : Carub.0004s3025 C. rubella v1.1
Defline:  (1 of 3) 4.2.1.2 - Fumarate hydratase / Fumarase Genomic Order:  3025
Name:  ? Carub.0004s3025 Secondary Identifier:  ? PAC:39238312
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY-561 Capsella rubella pathologic  
Crubella PWY-5690 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s3025 0.5kb upstream 0.5kb upstream 4747 true scaffold_4: 14837178-14841924 Capsella rubella
Carub.0004s3025 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 14837178-14837677 Capsella rubella
Carub.0004s3025 0.5kb downstream 0.5kb downstream 4747 true scaffold_4: 14837678-14842424 Capsella rubella
Carub.0004s3025 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 14841925-14842424 Capsella rubella
Carub.0004s3025 1.0kb upstream 1.0kb upstream 5247 true scaffold_4: 14836678-14841924 Capsella rubella
Carub.0004s3025 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 14836678-14837677 Capsella rubella
Carub.0004s3025 1.0kb downstream 1.0kb downstream 5247 true scaffold_4: 14837678-14842924 Capsella rubella
Carub.0004s3025 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 14841925-14842924 Capsella rubella
Carub.0004s3025 2.0kb upstream 2.0kb upstream 6247 true scaffold_4: 14835678-14841924 Capsella rubella
Carub.0004s3025 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 14835678-14837677 Capsella rubella
Carub.0004s3025 2.0kb downstream 2.0kb downstream 6247 true scaffold_4: 14837678-14843924 Capsella rubella
Carub.0004s3025 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 14841925-14843924 Capsella rubella
Carub.0004s3025 5.0kb upstream 5.0kb upstream 9247 true scaffold_4: 14832678-14841924 Capsella rubella
Carub.0004s3025 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 14832678-14837677 Capsella rubella
Carub.0004s3025 5.0kb downstream 5.0kb downstream 9247 true scaffold_4: 14837678-14846924 Capsella rubella
Carub.0004s3025 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 14841925-14846924 Capsella rubella
Carub.0004s3025 10.0kb upstream 10.0kb upstream 14247 true scaffold_4: 14827678-14841924 Capsella rubella
Carub.0004s3025 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 14827678-14837677 Capsella rubella
Carub.0004s3025 10.0kb downstream 10.0kb downstream 14247 true scaffold_4: 14837678-14851924 Capsella rubella
Carub.0004s3025 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 14841925-14851924 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373971 5261 Brassicaceae View MSA
123829006 5264 Brassicales-Malvales View MSA
124336503 5266 SBM View MSA
124247146 5268 Malvidae View MSA
124069053 5270 Rosid View MSA
123742189 5271 Pentapetalae View MSA
122791396 5272 Eudicot View MSA
122047120 5273 Angiosperm View MSA
121349544 5274 Embryophyte View MSA
123423814 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain