Gene : Carub.0043s0006 C. rubella v1.1
Defline:  (1 of 3) K01923 - phosphoribosylaminoimidazole-succinocarboxamide synthase (purC) Genomic Order:  6
Name:  ? Carub.0043s0006 Secondary Identifier:  ? PAC:39231795
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6124 Capsella rubella pathologic  
Crubella PWY-841 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0043s0006 0.5kb upstream 0.5kb upstream 19452 true scaffold_43: 8947-28398 Capsella rubella
Carub.0043s0006 0.5kb upstream 0.5kb upstream 500 false scaffold_43: 27899-28398 Capsella rubella
Carub.0043s0006 0.5kb downstream 0.5kb downstream 19452 true scaffold_43: 8447-27898 Capsella rubella
Carub.0043s0006 0.5kb downstream 0.5kb downstream 500 false scaffold_43: 8447-8946 Capsella rubella
Carub.0043s0006 1.0kb upstream 1.0kb upstream 19952 true scaffold_43: 8947-28898 Capsella rubella
Carub.0043s0006 1.0kb upstream 1.0kb upstream 1000 false scaffold_43: 27899-28898 Capsella rubella
Carub.0043s0006 1.0kb downstream 1.0kb downstream 19952 true scaffold_43: 7947-27898 Capsella rubella
Carub.0043s0006 1.0kb downstream 1.0kb downstream 1000 false scaffold_43: 7947-8946 Capsella rubella
Carub.0043s0006 2.0kb upstream 2.0kb upstream 20952 true scaffold_43: 8947-29898 Capsella rubella
Carub.0043s0006 2.0kb upstream 2.0kb upstream 2000 false scaffold_43: 27899-29898 Capsella rubella
Carub.0043s0006 2.0kb downstream 2.0kb downstream 20952 true scaffold_43: 6947-27898 Capsella rubella
Carub.0043s0006 2.0kb downstream 2.0kb downstream 2000 false scaffold_43: 6947-8946 Capsella rubella
Carub.0043s0006 5.0kb upstream 5.0kb upstream 23952 true scaffold_43: 8947-32898 Capsella rubella
Carub.0043s0006 5.0kb upstream 5.0kb upstream 5000 false scaffold_43: 27899-32898 Capsella rubella
Carub.0043s0006 5.0kb downstream 5.0kb downstream 23952 true scaffold_43: 3947-27898 Capsella rubella
Carub.0043s0006 5.0kb downstream 5.0kb downstream 5000 false scaffold_43: 3947-8946 Capsella rubella
Carub.0043s0006 10.0kb upstream 10.0kb upstream 28952 true scaffold_43: 8947-37898 Capsella rubella
Carub.0043s0006 10.0kb upstream 10.0kb upstream 10000 false scaffold_43: 27899-37898 Capsella rubella
Carub.0043s0006 10.0kb downstream 10.0kb downstream 27898 true scaffold_43: 1-27898 Capsella rubella
Carub.0043s0006 10.0kb downstream 10.0kb downstream 8946 false scaffold_43: 1-8946 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381368 5261 Brassicaceae View MSA
123829780 5264 Brassicales-Malvales View MSA
124339930 5266 SBM View MSA
124242739 5268 Malvidae View MSA
124065715 5270 Rosid View MSA
123739359 5271 Pentapetalae View MSA
122791298 5272 Eudicot View MSA
122044442 5273 Angiosperm View MSA
121346335 5274 Embryophyte View MSA
123424061 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain