Gene : Carub.0004s3085 C. rubella v1.1
Defline:  (1 of 2) PTHR11592:SF17 - GLUTATHIONE PEROXIDASE 4-RELATED Genomic Order:  3085
Name:  ? Carub.0004s3085 Secondary Identifier:  ? PAC:39238575
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella DETOX1-PWY-1 Capsella rubella pathologic  
Crubella PWY-4081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s3085 0.5kb upstream 0.5kb upstream 1724 true scaffold_4: 15037122-15038845 Capsella rubella
Carub.0004s3085 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 15037122-15037621 Capsella rubella
Carub.0004s3085 0.5kb downstream 0.5kb downstream 1724 true scaffold_4: 15037622-15039345 Capsella rubella
Carub.0004s3085 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 15038846-15039345 Capsella rubella
Carub.0004s3085 1.0kb upstream 1.0kb upstream 2224 true scaffold_4: 15036622-15038845 Capsella rubella
Carub.0004s3085 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 15036622-15037621 Capsella rubella
Carub.0004s3085 1.0kb downstream 1.0kb downstream 2224 true scaffold_4: 15037622-15039845 Capsella rubella
Carub.0004s3085 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 15038846-15039845 Capsella rubella
Carub.0004s3085 2.0kb upstream 2.0kb upstream 3224 true scaffold_4: 15035622-15038845 Capsella rubella
Carub.0004s3085 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 15035622-15037621 Capsella rubella
Carub.0004s3085 2.0kb downstream 2.0kb downstream 3224 true scaffold_4: 15037622-15040845 Capsella rubella
Carub.0004s3085 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 15038846-15040845 Capsella rubella
Carub.0004s3085 5.0kb upstream 5.0kb upstream 6224 true scaffold_4: 15032622-15038845 Capsella rubella
Carub.0004s3085 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 15032622-15037621 Capsella rubella
Carub.0004s3085 5.0kb downstream 5.0kb downstream 6224 true scaffold_4: 15037622-15043845 Capsella rubella
Carub.0004s3085 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 15038846-15043845 Capsella rubella
Carub.0004s3085 10.0kb upstream 10.0kb upstream 11224 true scaffold_4: 15027622-15038845 Capsella rubella
Carub.0004s3085 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 15027622-15037621 Capsella rubella
Carub.0004s3085 10.0kb downstream 10.0kb downstream 8142 true scaffold_4: 15037622-15045763 Capsella rubella
Carub.0004s3085 10.0kb downstream 10.0kb downstream 6918 false scaffold_4: 15038846-15045763 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026200 5273 Angiosperm View MSA
122367831 5261 Brassicaceae View MSA
123836838 5264 Brassicales-Malvales View MSA
124339844 5266 SBM View MSA
124253459 5268 Malvidae View MSA
124065058 5270 Rosid View MSA
123743608 5271 Pentapetalae View MSA
122796492 5272 Eudicot View MSA
121296225 5274 Embryophyte View MSA
123426849 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain