Gene : Carub.0005s0277 C. rubella v1.1
Defline:  (1 of 5) PTHR33673//PTHR33673:SF1 - FAMILY NOT NAMED // GENOMIC DNA, CHROMOSOME 5, TAC CLONE:K3K3 Genomic Order:  277
Name:  ? Carub.0005s0277 Secondary Identifier:  ? PAC:39225007
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s0277 0.5kb upstream 0.5kb upstream 1803 true scaffold_5: 1113540-1115342 Capsella rubella
Carub.0005s0277 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 1113540-1114039 Capsella rubella
Carub.0005s0277 0.5kb downstream 0.5kb downstream 1803 true scaffold_5: 1114040-1115842 Capsella rubella
Carub.0005s0277 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 1115343-1115842 Capsella rubella
Carub.0005s0277 1.0kb upstream 1.0kb upstream 2303 true scaffold_5: 1113040-1115342 Capsella rubella
Carub.0005s0277 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 1113040-1114039 Capsella rubella
Carub.0005s0277 1.0kb downstream 1.0kb downstream 2303 true scaffold_5: 1114040-1116342 Capsella rubella
Carub.0005s0277 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 1115343-1116342 Capsella rubella
Carub.0005s0277 2.0kb upstream 2.0kb upstream 3303 true scaffold_5: 1112040-1115342 Capsella rubella
Carub.0005s0277 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 1112040-1114039 Capsella rubella
Carub.0005s0277 2.0kb downstream 2.0kb downstream 3303 true scaffold_5: 1114040-1117342 Capsella rubella
Carub.0005s0277 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 1115343-1117342 Capsella rubella
Carub.0005s0277 5.0kb upstream 5.0kb upstream 6303 true scaffold_5: 1109040-1115342 Capsella rubella
Carub.0005s0277 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 1109040-1114039 Capsella rubella
Carub.0005s0277 5.0kb downstream 5.0kb downstream 6303 true scaffold_5: 1114040-1120342 Capsella rubella
Carub.0005s0277 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 1115343-1120342 Capsella rubella
Carub.0005s0277 10.0kb upstream 10.0kb upstream 11303 true scaffold_5: 1104040-1115342 Capsella rubella
Carub.0005s0277 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 1104040-1114039 Capsella rubella
Carub.0005s0277 10.0kb downstream 10.0kb downstream 11303 true scaffold_5: 1114040-1125342 Capsella rubella
Carub.0005s0277 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 1115343-1125342 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379488 5261 Brassicaceae View MSA
123838207 5264 Brassicales-Malvales View MSA
124322414 5266 SBM View MSA
124253062 5268 Malvidae View MSA
124071200 5270 Rosid View MSA
123751768 5271 Pentapetalae View MSA
122796743 5272 Eudicot View MSA
122047095 5273 Angiosperm View MSA
121310690 5274 Embryophyte View MSA
123348114 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain