Gene : Carub.0005s0012 C. rubella v1.1
Defline:  (1 of 1) PTHR11627//PTHR11627:SF8 - FRUCTOSE-BISPHOSPHATE ALDOLASE // FRUCTOSE-BISPHOSPHATE ALDOLASE 3, CHLOROPLASTIC-RELATED Genomic Order:  12
Name:  ? Carub.0005s0012 Secondary Identifier:  ? PAC:39224608
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Sequence Feature Displayer

Ontology Annotation Displayer

10 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ANAEROFRUCAT-PWY Capsella rubella pathologic  
Crubella ANAGLYCOLYSIS-PWY Capsella rubella pathologic  
Crubella CALVIN-PWY Capsella rubella pathologic  
Crubella GLUCONEO-PWY Capsella rubella pathologic  
Crubella PHOTOALL-PWY Capsella rubella pathologic  
Crubella PWY-1042 Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY66-373 Capsella rubella pathologic  
Crubella PWY66-399 Capsella rubella pathologic  
Crubella SUCSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s0012 0.5kb upstream 0.5kb upstream 2399 true scaffold_5: 38764-41162 Capsella rubella
Carub.0005s0012 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 40663-41162 Capsella rubella
Carub.0005s0012 0.5kb downstream 0.5kb downstream 2399 true scaffold_5: 38264-40662 Capsella rubella
Carub.0005s0012 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 38264-38763 Capsella rubella
Carub.0005s0012 1.0kb upstream 1.0kb upstream 2899 true scaffold_5: 38764-41662 Capsella rubella
Carub.0005s0012 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 40663-41662 Capsella rubella
Carub.0005s0012 1.0kb downstream 1.0kb downstream 2899 true scaffold_5: 37764-40662 Capsella rubella
Carub.0005s0012 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 37764-38763 Capsella rubella
Carub.0005s0012 2.0kb upstream 2.0kb upstream 3899 true scaffold_5: 38764-42662 Capsella rubella
Carub.0005s0012 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 40663-42662 Capsella rubella
Carub.0005s0012 2.0kb downstream 2.0kb downstream 3899 true scaffold_5: 36764-40662 Capsella rubella
Carub.0005s0012 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36764-38763 Capsella rubella
Carub.0005s0012 5.0kb upstream 5.0kb upstream 6899 true scaffold_5: 38764-45662 Capsella rubella
Carub.0005s0012 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 40663-45662 Capsella rubella
Carub.0005s0012 5.0kb downstream 5.0kb downstream 6899 true scaffold_5: 33764-40662 Capsella rubella
Carub.0005s0012 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 33764-38763 Capsella rubella
Carub.0005s0012 10.0kb upstream 10.0kb upstream 11899 true scaffold_5: 38764-50662 Capsella rubella
Carub.0005s0012 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 40663-50662 Capsella rubella
Carub.0005s0012 10.0kb downstream 10.0kb downstream 11899 true scaffold_5: 28764-40662 Capsella rubella
Carub.0005s0012 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 28764-38763 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373193 5261 Brassicaceae View MSA
123828058 5264 Brassicales-Malvales View MSA
124343223 5266 SBM View MSA
124244605 5268 Malvidae View MSA
124069125 5270 Rosid View MSA
123742159 5271 Pentapetalae View MSA
122788432 5272 Eudicot View MSA
122043152 5273 Angiosperm View MSA
121348633 5274 Embryophyte View MSA
123424623 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain