Gene : Carub.0005s0015 C. rubella v1.1
Defline:  (1 of 3) PTHR10165//PTHR10165:SF80 - LIPID PHOSPHATE PHOSPHATASE // LIPID PHOSPHATE PHOSPHATASE 1-RELATED Genomic Order:  15
Name:  ? Carub.0005s0015 Secondary Identifier:  ? PAC:39226680
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRIGLSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s0015 0.5kb upstream 0.5kb upstream 2380 true scaffold_5: 51810-54189 Capsella rubella
Carub.0005s0015 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 53690-54189 Capsella rubella
Carub.0005s0015 0.5kb downstream 0.5kb downstream 2380 true scaffold_5: 51310-53689 Capsella rubella
Carub.0005s0015 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 51310-51809 Capsella rubella
Carub.0005s0015 1.0kb upstream 1.0kb upstream 2880 true scaffold_5: 51810-54689 Capsella rubella
Carub.0005s0015 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 53690-54689 Capsella rubella
Carub.0005s0015 1.0kb downstream 1.0kb downstream 2880 true scaffold_5: 50810-53689 Capsella rubella
Carub.0005s0015 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 50810-51809 Capsella rubella
Carub.0005s0015 2.0kb upstream 2.0kb upstream 3880 true scaffold_5: 51810-55689 Capsella rubella
Carub.0005s0015 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 53690-55689 Capsella rubella
Carub.0005s0015 2.0kb downstream 2.0kb downstream 3880 true scaffold_5: 49810-53689 Capsella rubella
Carub.0005s0015 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 49810-51809 Capsella rubella
Carub.0005s0015 5.0kb upstream 5.0kb upstream 6880 true scaffold_5: 51810-58689 Capsella rubella
Carub.0005s0015 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 53690-58689 Capsella rubella
Carub.0005s0015 5.0kb downstream 5.0kb downstream 6880 true scaffold_5: 46810-53689 Capsella rubella
Carub.0005s0015 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46810-51809 Capsella rubella
Carub.0005s0015 10.0kb upstream 10.0kb upstream 11880 true scaffold_5: 51810-63689 Capsella rubella
Carub.0005s0015 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 53690-63689 Capsella rubella
Carub.0005s0015 10.0kb downstream 10.0kb downstream 11880 true scaffold_5: 41810-53689 Capsella rubella
Carub.0005s0015 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 41810-51809 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379040 5261 Brassicaceae View MSA
123839517 5264 Brassicales-Malvales View MSA
124322618 5266 SBM View MSA
124248265 5268 Malvidae View MSA
124074068 5270 Rosid View MSA
123752776 5271 Pentapetalae View MSA
122787523 5272 Eudicot View MSA
122042575 5273 Angiosperm View MSA
121350600 5274 Embryophyte View MSA
123428329 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain