Gene : Carub.0005s0042 C. rubella v1.1
Defline:  (1 of 1) PTHR10285:SF53 - URIDINE KINASE Genomic Order:  42
Name:  ? Carub.0005s0042 Secondary Identifier:  ? PAC:39226471
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7193 Capsella rubella pathologic  
Crubella PWY-7196 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s0042 0.5kb upstream 0.5kb upstream 6504 true scaffold_5: 151600-158103 Capsella rubella
Carub.0005s0042 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 151600-152099 Capsella rubella
Carub.0005s0042 0.5kb downstream 0.5kb downstream 6504 true scaffold_5: 152100-158603 Capsella rubella
Carub.0005s0042 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 158104-158603 Capsella rubella
Carub.0005s0042 1.0kb upstream 1.0kb upstream 7004 true scaffold_5: 151100-158103 Capsella rubella
Carub.0005s0042 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 151100-152099 Capsella rubella
Carub.0005s0042 1.0kb downstream 1.0kb downstream 7004 true scaffold_5: 152100-159103 Capsella rubella
Carub.0005s0042 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 158104-159103 Capsella rubella
Carub.0005s0042 2.0kb upstream 2.0kb upstream 8004 true scaffold_5: 150100-158103 Capsella rubella
Carub.0005s0042 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 150100-152099 Capsella rubella
Carub.0005s0042 2.0kb downstream 2.0kb downstream 8004 true scaffold_5: 152100-160103 Capsella rubella
Carub.0005s0042 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 158104-160103 Capsella rubella
Carub.0005s0042 5.0kb upstream 5.0kb upstream 11004 true scaffold_5: 147100-158103 Capsella rubella
Carub.0005s0042 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 147100-152099 Capsella rubella
Carub.0005s0042 5.0kb downstream 5.0kb downstream 11004 true scaffold_5: 152100-163103 Capsella rubella
Carub.0005s0042 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 158104-163103 Capsella rubella
Carub.0005s0042 10.0kb upstream 10.0kb upstream 16004 true scaffold_5: 142100-158103 Capsella rubella
Carub.0005s0042 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 142100-152099 Capsella rubella
Carub.0005s0042 10.0kb downstream 10.0kb downstream 16004 true scaffold_5: 152100-168103 Capsella rubella
Carub.0005s0042 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 158104-168103 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369463 5261 Brassicaceae View MSA
123834288 5264 Brassicales-Malvales View MSA
124339414 5266 SBM View MSA
124241598 5268 Malvidae View MSA
124067943 5270 Rosid View MSA
123741616 5271 Pentapetalae View MSA
122787243 5272 Eudicot View MSA
122044880 5273 Angiosperm View MSA
121351427 5274 Embryophyte View MSA
123427517 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain