Gene : Carub.0005s0048 C. rubella v1.1
Defline:  (1 of 56) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  48
Name:  ? Carub.0005s0048 Secondary Identifier:  ? PAC:39225254
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s0048 0.5kb upstream 0.5kb upstream 2255 true scaffold_5: 177134-179388 Capsella rubella
Carub.0005s0048 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 178889-179388 Capsella rubella
Carub.0005s0048 0.5kb downstream 0.5kb downstream 2255 true scaffold_5: 176634-178888 Capsella rubella
Carub.0005s0048 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 176634-177133 Capsella rubella
Carub.0005s0048 1.0kb upstream 1.0kb upstream 2755 true scaffold_5: 177134-179888 Capsella rubella
Carub.0005s0048 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 178889-179888 Capsella rubella
Carub.0005s0048 1.0kb downstream 1.0kb downstream 2755 true scaffold_5: 176134-178888 Capsella rubella
Carub.0005s0048 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 176134-177133 Capsella rubella
Carub.0005s0048 2.0kb upstream 2.0kb upstream 3755 true scaffold_5: 177134-180888 Capsella rubella
Carub.0005s0048 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 178889-180888 Capsella rubella
Carub.0005s0048 2.0kb downstream 2.0kb downstream 3755 true scaffold_5: 175134-178888 Capsella rubella
Carub.0005s0048 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 175134-177133 Capsella rubella
Carub.0005s0048 5.0kb upstream 5.0kb upstream 6755 true scaffold_5: 177134-183888 Capsella rubella
Carub.0005s0048 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 178889-183888 Capsella rubella
Carub.0005s0048 5.0kb downstream 5.0kb downstream 6755 true scaffold_5: 172134-178888 Capsella rubella
Carub.0005s0048 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 172134-177133 Capsella rubella
Carub.0005s0048 10.0kb upstream 10.0kb upstream 11755 true scaffold_5: 177134-188888 Capsella rubella
Carub.0005s0048 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 178889-188888 Capsella rubella
Carub.0005s0048 10.0kb downstream 10.0kb downstream 11755 true scaffold_5: 167134-178888 Capsella rubella
Carub.0005s0048 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 167134-177133 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369960 5261 Brassicaceae View MSA
123841181 5264 Brassicales-Malvales View MSA
124347410 5266 SBM View MSA
124245481 5268 Malvidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain