Gene : Carub.0005s0438 C. rubella v1.1
Defline:  (1 of 1) 2.1.1.214 - tRNA (guanine(10)-N(2))-methyltransferase Genomic Order:  438
Name:  ? Carub.0005s0438 Secondary Identifier:  ? PAC:39225999
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6829 Capsella rubella pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s0438 0.5kb upstream 0.5kb upstream 2352 true scaffold_5: 1750671-1753022 Capsella rubella
Carub.0005s0438 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 1752523-1753022 Capsella rubella
Carub.0005s0438 0.5kb downstream 0.5kb downstream 2352 true scaffold_5: 1750171-1752522 Capsella rubella
Carub.0005s0438 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 1750171-1750670 Capsella rubella
Carub.0005s0438 1.0kb upstream 1.0kb upstream 2852 true scaffold_5: 1750671-1753522 Capsella rubella
Carub.0005s0438 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 1752523-1753522 Capsella rubella
Carub.0005s0438 1.0kb downstream 1.0kb downstream 2852 true scaffold_5: 1749671-1752522 Capsella rubella
Carub.0005s0438 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 1749671-1750670 Capsella rubella
Carub.0005s0438 2.0kb upstream 2.0kb upstream 3852 true scaffold_5: 1750671-1754522 Capsella rubella
Carub.0005s0438 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 1752523-1754522 Capsella rubella
Carub.0005s0438 2.0kb downstream 2.0kb downstream 3852 true scaffold_5: 1748671-1752522 Capsella rubella
Carub.0005s0438 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 1748671-1750670 Capsella rubella
Carub.0005s0438 5.0kb upstream 5.0kb upstream 6852 true scaffold_5: 1750671-1757522 Capsella rubella
Carub.0005s0438 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 1752523-1757522 Capsella rubella
Carub.0005s0438 5.0kb downstream 5.0kb downstream 6852 true scaffold_5: 1745671-1752522 Capsella rubella
Carub.0005s0438 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 1745671-1750670 Capsella rubella
Carub.0005s0438 10.0kb upstream 10.0kb upstream 11852 true scaffold_5: 1750671-1762522 Capsella rubella
Carub.0005s0438 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 1752523-1762522 Capsella rubella
Carub.0005s0438 10.0kb downstream 10.0kb downstream 11852 true scaffold_5: 1740671-1752522 Capsella rubella
Carub.0005s0438 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 1740671-1750670 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366323 5261 Brassicaceae View MSA
123829804 5264 Brassicales-Malvales View MSA
124342748 5266 SBM View MSA
124252860 5268 Malvidae View MSA
124065317 5270 Rosid View MSA
123738561 5271 Pentapetalae View MSA
122788498 5272 Eudicot View MSA
122048014 5273 Angiosperm View MSA
121347099 5274 Embryophyte View MSA
123424311 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain