Gene : Carub.0005s0466 C. rubella v1.1
Defline:  (1 of 3) 1.2.1.13 - Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (phosphorylating) / Triosephosphate dehydrogenase (NADP+) Genomic Order:  466
Name:  ? Carub.0005s0466 Secondary Identifier:  ? PAC:39224803
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Sequence Feature Displayer

Ontology Annotation Displayer

9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ANAEROFRUCAT-PWY Capsella rubella pathologic  
Crubella ANAGLYCOLYSIS-PWY Capsella rubella pathologic  
Crubella CALVIN-PWY Capsella rubella pathologic  
Crubella GLUCONEO-PWY Capsella rubella pathologic  
Crubella PHOTOALL-PWY Capsella rubella pathologic  
Crubella PWY-1042 Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY66-399 Capsella rubella pathologic  
Crubella SUCSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s0466 0.5kb upstream 0.5kb upstream 2352 true scaffold_5: 1855438-1857789 Capsella rubella
Carub.0005s0466 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 1855438-1855937 Capsella rubella
Carub.0005s0466 0.5kb downstream 0.5kb downstream 2352 true scaffold_5: 1855938-1858289 Capsella rubella
Carub.0005s0466 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 1857790-1858289 Capsella rubella
Carub.0005s0466 1.0kb upstream 1.0kb upstream 2852 true scaffold_5: 1854938-1857789 Capsella rubella
Carub.0005s0466 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 1854938-1855937 Capsella rubella
Carub.0005s0466 1.0kb downstream 1.0kb downstream 2852 true scaffold_5: 1855938-1858789 Capsella rubella
Carub.0005s0466 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 1857790-1858789 Capsella rubella
Carub.0005s0466 2.0kb upstream 2.0kb upstream 3852 true scaffold_5: 1853938-1857789 Capsella rubella
Carub.0005s0466 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 1853938-1855937 Capsella rubella
Carub.0005s0466 2.0kb downstream 2.0kb downstream 3852 true scaffold_5: 1855938-1859789 Capsella rubella
Carub.0005s0466 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 1857790-1859789 Capsella rubella
Carub.0005s0466 5.0kb upstream 5.0kb upstream 6852 true scaffold_5: 1850938-1857789 Capsella rubella
Carub.0005s0466 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 1850938-1855937 Capsella rubella
Carub.0005s0466 5.0kb downstream 5.0kb downstream 6852 true scaffold_5: 1855938-1862789 Capsella rubella
Carub.0005s0466 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 1857790-1862789 Capsella rubella
Carub.0005s0466 10.0kb upstream 10.0kb upstream 11852 true scaffold_5: 1845938-1857789 Capsella rubella
Carub.0005s0466 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 1845938-1855937 Capsella rubella
Carub.0005s0466 10.0kb downstream 10.0kb downstream 11852 true scaffold_5: 1855938-1867789 Capsella rubella
Carub.0005s0466 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 1857790-1867789 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376732 5261 Brassicaceae View MSA
123837960 5264 Brassicales-Malvales View MSA
124344179 5266 SBM View MSA
124254162 5268 Malvidae View MSA
124061607 5270 Rosid View MSA
123737488 5271 Pentapetalae View MSA
122795007 5272 Eudicot View MSA
122045489 5273 Angiosperm View MSA
121346351 5274 Embryophyte View MSA
123425156 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain