Gene : Carub.0005s0360 C. rubella v1.1
Defline:  (1 of 4) 5.3.99.6 - Allene-oxide cyclase Genomic Order:  360
Name:  ? Carub.0005s0360 Secondary Identifier:  ? PAC:39225509
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-735 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s0360 0.5kb upstream 0.5kb upstream 1559 true scaffold_5: 1469369-1470927 Capsella rubella
Carub.0005s0360 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 1469369-1469868 Capsella rubella
Carub.0005s0360 0.5kb downstream 0.5kb downstream 1559 true scaffold_5: 1469869-1471427 Capsella rubella
Carub.0005s0360 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 1470928-1471427 Capsella rubella
Carub.0005s0360 1.0kb upstream 1.0kb upstream 2059 true scaffold_5: 1468869-1470927 Capsella rubella
Carub.0005s0360 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 1468869-1469868 Capsella rubella
Carub.0005s0360 1.0kb downstream 1.0kb downstream 2059 true scaffold_5: 1469869-1471927 Capsella rubella
Carub.0005s0360 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 1470928-1471927 Capsella rubella
Carub.0005s0360 2.0kb upstream 2.0kb upstream 3059 true scaffold_5: 1467869-1470927 Capsella rubella
Carub.0005s0360 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 1467869-1469868 Capsella rubella
Carub.0005s0360 2.0kb downstream 2.0kb downstream 3059 true scaffold_5: 1469869-1472927 Capsella rubella
Carub.0005s0360 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 1470928-1472927 Capsella rubella
Carub.0005s0360 5.0kb upstream 5.0kb upstream 6059 true scaffold_5: 1464869-1470927 Capsella rubella
Carub.0005s0360 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 1464869-1469868 Capsella rubella
Carub.0005s0360 5.0kb downstream 5.0kb downstream 6059 true scaffold_5: 1469869-1475927 Capsella rubella
Carub.0005s0360 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 1470928-1475927 Capsella rubella
Carub.0005s0360 10.0kb upstream 10.0kb upstream 11059 true scaffold_5: 1459869-1470927 Capsella rubella
Carub.0005s0360 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 1459869-1469868 Capsella rubella
Carub.0005s0360 10.0kb downstream 10.0kb downstream 11059 true scaffold_5: 1469869-1480927 Capsella rubella
Carub.0005s0360 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 1470928-1480927 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380757 5261 Brassicaceae View MSA
123802886 5264 Brassicales-Malvales View MSA
124348602 5266 SBM View MSA
124252758 5268 Malvidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain