Gene : Carub.0005s0430 C. rubella v1.1
Defline:  (1 of 1) PTHR11452//PTHR11452:SF14 - ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE // ALPHA-GALACTOSIDASE A Genomic Order:  430
Name:  ? Carub.0005s0430 Secondary Identifier:  ? PAC:39224273
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY0-1301 Capsella rubella pathologic  
Crubella PWY-6527 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s0430 0.5kb upstream 0.5kb upstream 3989 true scaffold_5: 1719057-1723045 Capsella rubella
Carub.0005s0430 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 1719057-1719556 Capsella rubella
Carub.0005s0430 0.5kb downstream 0.5kb downstream 3989 true scaffold_5: 1719557-1723545 Capsella rubella
Carub.0005s0430 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 1723046-1723545 Capsella rubella
Carub.0005s0430 1.0kb upstream 1.0kb upstream 4489 true scaffold_5: 1718557-1723045 Capsella rubella
Carub.0005s0430 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 1718557-1719556 Capsella rubella
Carub.0005s0430 1.0kb downstream 1.0kb downstream 4489 true scaffold_5: 1719557-1724045 Capsella rubella
Carub.0005s0430 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 1723046-1724045 Capsella rubella
Carub.0005s0430 2.0kb upstream 2.0kb upstream 5489 true scaffold_5: 1717557-1723045 Capsella rubella
Carub.0005s0430 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 1717557-1719556 Capsella rubella
Carub.0005s0430 2.0kb downstream 2.0kb downstream 5489 true scaffold_5: 1719557-1725045 Capsella rubella
Carub.0005s0430 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 1723046-1725045 Capsella rubella
Carub.0005s0430 5.0kb upstream 5.0kb upstream 8489 true scaffold_5: 1714557-1723045 Capsella rubella
Carub.0005s0430 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 1714557-1719556 Capsella rubella
Carub.0005s0430 5.0kb downstream 5.0kb downstream 8489 true scaffold_5: 1719557-1728045 Capsella rubella
Carub.0005s0430 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 1723046-1728045 Capsella rubella
Carub.0005s0430 10.0kb upstream 10.0kb upstream 13489 true scaffold_5: 1709557-1723045 Capsella rubella
Carub.0005s0430 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 1709557-1719556 Capsella rubella
Carub.0005s0430 10.0kb downstream 10.0kb downstream 13489 true scaffold_5: 1719557-1733045 Capsella rubella
Carub.0005s0430 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 1723046-1733045 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364962 5261 Brassicaceae View MSA
123827886 5264 Brassicales-Malvales View MSA
124343227 5266 SBM View MSA
124238425 5268 Malvidae View MSA
124064341 5270 Rosid View MSA
123740921 5271 Pentapetalae View MSA
122794912 5272 Eudicot View MSA
122043993 5273 Angiosperm View MSA
121347299 5274 Embryophyte View MSA
123428348 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain