Gene : Carub.0005s0803 C. rubella v1.1
Defline:  (1 of 1) PTHR11468//PTHR11468:SF8 - GLYCOGEN PHOSPHORYLASE // ALPHA-GLUCAN PHOSPHORYLASE 1 Genomic Order:  803
Name:  ? Carub.0005s0803 Secondary Identifier:  ? PAC:39224990
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7238 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s0803 0.5kb upstream 0.5kb upstream 5474 true scaffold_5: 3559502-3564975 Capsella rubella
Carub.0005s0803 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 3559502-3560001 Capsella rubella
Carub.0005s0803 0.5kb downstream 0.5kb downstream 5474 true scaffold_5: 3560002-3565475 Capsella rubella
Carub.0005s0803 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 3564976-3565475 Capsella rubella
Carub.0005s0803 1.0kb upstream 1.0kb upstream 5974 true scaffold_5: 3559002-3564975 Capsella rubella
Carub.0005s0803 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 3559002-3560001 Capsella rubella
Carub.0005s0803 1.0kb downstream 1.0kb downstream 5974 true scaffold_5: 3560002-3565975 Capsella rubella
Carub.0005s0803 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 3564976-3565975 Capsella rubella
Carub.0005s0803 2.0kb upstream 2.0kb upstream 6974 true scaffold_5: 3558002-3564975 Capsella rubella
Carub.0005s0803 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 3558002-3560001 Capsella rubella
Carub.0005s0803 2.0kb downstream 2.0kb downstream 6974 true scaffold_5: 3560002-3566975 Capsella rubella
Carub.0005s0803 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 3564976-3566975 Capsella rubella
Carub.0005s0803 5.0kb upstream 5.0kb upstream 9974 true scaffold_5: 3555002-3564975 Capsella rubella
Carub.0005s0803 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 3555002-3560001 Capsella rubella
Carub.0005s0803 5.0kb downstream 5.0kb downstream 9974 true scaffold_5: 3560002-3569975 Capsella rubella
Carub.0005s0803 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 3564976-3569975 Capsella rubella
Carub.0005s0803 10.0kb upstream 10.0kb upstream 14974 true scaffold_5: 3550002-3564975 Capsella rubella
Carub.0005s0803 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 3550002-3560001 Capsella rubella
Carub.0005s0803 10.0kb downstream 10.0kb downstream 14974 true scaffold_5: 3560002-3574975 Capsella rubella
Carub.0005s0803 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 3564976-3574975 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370599 5261 Brassicaceae View MSA
123834148 5264 Brassicales-Malvales View MSA
124350391 5266 SBM View MSA
124253620 5268 Malvidae View MSA
124071447 5270 Rosid View MSA
123744201 5271 Pentapetalae View MSA
122788131 5272 Eudicot View MSA
122045780 5273 Angiosperm View MSA
121351120 5274 Embryophyte View MSA
123425744 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain