Gene : Carub.0005s0630 C. rubella v1.1
Defline:  (1 of 1) K01956 - carbamoyl-phosphate synthase small subunit (carA, CPA1) Genomic Order:  630
Name:  ? Carub.0005s0630 Secondary Identifier:  ? PAC:39226512
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ARGSYNBSUB-PWY Capsella rubella pathologic  
Crubella ARGSYN-PWY Capsella rubella pathologic  
Crubella CITRULBIO-PWY Capsella rubella pathologic  
Crubella GLUTAMINDEG-PWY Capsella rubella pathologic  
Crubella PWY0-162 Capsella rubella pathologic  
Crubella PWY-4984 Capsella rubella pathologic  
Crubella PWY-5686 Capsella rubella pathologic  
Crubella PWY-7211 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s0630 0.5kb upstream 0.5kb upstream 3049 true scaffold_5: 2586132-2589180 Capsella rubella
Carub.0005s0630 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 2588681-2589180 Capsella rubella
Carub.0005s0630 0.5kb downstream 0.5kb downstream 3049 true scaffold_5: 2585632-2588680 Capsella rubella
Carub.0005s0630 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2585632-2586131 Capsella rubella
Carub.0005s0630 1.0kb upstream 1.0kb upstream 3549 true scaffold_5: 2586132-2589680 Capsella rubella
Carub.0005s0630 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 2588681-2589680 Capsella rubella
Carub.0005s0630 1.0kb downstream 1.0kb downstream 3549 true scaffold_5: 2585132-2588680 Capsella rubella
Carub.0005s0630 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2585132-2586131 Capsella rubella
Carub.0005s0630 2.0kb upstream 2.0kb upstream 4549 true scaffold_5: 2586132-2590680 Capsella rubella
Carub.0005s0630 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 2588681-2590680 Capsella rubella
Carub.0005s0630 2.0kb downstream 2.0kb downstream 4549 true scaffold_5: 2584132-2588680 Capsella rubella
Carub.0005s0630 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2584132-2586131 Capsella rubella
Carub.0005s0630 5.0kb upstream 5.0kb upstream 7549 true scaffold_5: 2586132-2593680 Capsella rubella
Carub.0005s0630 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 2588681-2593680 Capsella rubella
Carub.0005s0630 5.0kb downstream 5.0kb downstream 7549 true scaffold_5: 2581132-2588680 Capsella rubella
Carub.0005s0630 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2581132-2586131 Capsella rubella
Carub.0005s0630 10.0kb upstream 10.0kb upstream 12549 true scaffold_5: 2586132-2598680 Capsella rubella
Carub.0005s0630 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 2588681-2598680 Capsella rubella
Carub.0005s0630 10.0kb downstream 10.0kb downstream 12549 true scaffold_5: 2576132-2588680 Capsella rubella
Carub.0005s0630 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2576132-2586131 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372919 5261 Brassicaceae View MSA
123839532 5264 Brassicales-Malvales View MSA
124338612 5266 SBM View MSA
124252256 5268 Malvidae View MSA
124069141 5270 Rosid View MSA
123739104 5271 Pentapetalae View MSA
122788005 5272 Eudicot View MSA
122046797 5273 Angiosperm View MSA
121347244 5274 Embryophyte View MSA
123423822 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain