Gene : Carub.0005s1195 C. rubella v1.1
Defline:  (1 of 1) PTHR11476//PTHR11476:SF5 - HISTIDYL-TRNA SYNTHETASE // CLASS II AARS AND BIOTIN SYNTHETASES SUPERFAMILY PROTEIN-RELATED Genomic Order:  1195
Name:  ? Carub.0005s1195 Secondary Identifier:  ? PAC:39224343
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1195 0.5kb upstream 0.5kb upstream 3198 true scaffold_5: 6921391-6924588 Capsella rubella
Carub.0005s1195 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 6924089-6924588 Capsella rubella
Carub.0005s1195 0.5kb downstream 0.5kb downstream 3198 true scaffold_5: 6920891-6924088 Capsella rubella
Carub.0005s1195 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 6920891-6921390 Capsella rubella
Carub.0005s1195 1.0kb upstream 1.0kb upstream 3698 true scaffold_5: 6921391-6925088 Capsella rubella
Carub.0005s1195 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 6924089-6925088 Capsella rubella
Carub.0005s1195 1.0kb downstream 1.0kb downstream 3698 true scaffold_5: 6920391-6924088 Capsella rubella
Carub.0005s1195 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 6920391-6921390 Capsella rubella
Carub.0005s1195 2.0kb upstream 2.0kb upstream 4698 true scaffold_5: 6921391-6926088 Capsella rubella
Carub.0005s1195 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 6924089-6926088 Capsella rubella
Carub.0005s1195 2.0kb downstream 2.0kb downstream 4698 true scaffold_5: 6919391-6924088 Capsella rubella
Carub.0005s1195 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 6919391-6921390 Capsella rubella
Carub.0005s1195 5.0kb upstream 5.0kb upstream 7698 true scaffold_5: 6921391-6929088 Capsella rubella
Carub.0005s1195 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 6924089-6929088 Capsella rubella
Carub.0005s1195 5.0kb downstream 5.0kb downstream 7698 true scaffold_5: 6916391-6924088 Capsella rubella
Carub.0005s1195 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 6916391-6921390 Capsella rubella
Carub.0005s1195 10.0kb upstream 10.0kb upstream 12698 true scaffold_5: 6921391-6934088 Capsella rubella
Carub.0005s1195 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 6924089-6934088 Capsella rubella
Carub.0005s1195 10.0kb downstream 10.0kb downstream 12698 true scaffold_5: 6911391-6924088 Capsella rubella
Carub.0005s1195 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 6911391-6921390 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371522 5261 Brassicaceae View MSA
123828027 5264 Brassicales-Malvales View MSA
124321502 5266 SBM View MSA
124242032 5268 Malvidae View MSA
124069172 5270 Rosid View MSA
123739559 5271 Pentapetalae View MSA
122792579 5272 Eudicot View MSA
122042038 5273 Angiosperm View MSA
121344697 5274 Embryophyte View MSA
123424484 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain