Gene : Carub.0005s1234 C. rubella v1.1
Defline:  (1 of 37) K04506 - E3 ubiquitin-protein ligase SIAH1 (SIAH1) Genomic Order:  1234
Name:  ? Carub.0005s1234 Secondary Identifier:  ? PAC:39224468
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1234 0.5kb upstream 0.5kb upstream 1200 true scaffold_5: 7089860-7091059 Capsella rubella
Carub.0005s1234 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 7090560-7091059 Capsella rubella
Carub.0005s1234 0.5kb downstream 0.5kb downstream 1200 true scaffold_5: 7089360-7090559 Capsella rubella
Carub.0005s1234 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 7089360-7089859 Capsella rubella
Carub.0005s1234 1.0kb upstream 1.0kb upstream 1700 true scaffold_5: 7089860-7091559 Capsella rubella
Carub.0005s1234 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 7090560-7091559 Capsella rubella
Carub.0005s1234 1.0kb downstream 1.0kb downstream 1700 true scaffold_5: 7088860-7090559 Capsella rubella
Carub.0005s1234 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 7088860-7089859 Capsella rubella
Carub.0005s1234 2.0kb upstream 2.0kb upstream 2700 true scaffold_5: 7089860-7092559 Capsella rubella
Carub.0005s1234 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 7090560-7092559 Capsella rubella
Carub.0005s1234 2.0kb downstream 2.0kb downstream 2700 true scaffold_5: 7087860-7090559 Capsella rubella
Carub.0005s1234 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 7087860-7089859 Capsella rubella
Carub.0005s1234 5.0kb upstream 5.0kb upstream 5700 true scaffold_5: 7089860-7095559 Capsella rubella
Carub.0005s1234 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 7090560-7095559 Capsella rubella
Carub.0005s1234 5.0kb downstream 5.0kb downstream 5700 true scaffold_5: 7084860-7090559 Capsella rubella
Carub.0005s1234 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 7084860-7089859 Capsella rubella
Carub.0005s1234 10.0kb upstream 10.0kb upstream 10700 true scaffold_5: 7089860-7100559 Capsella rubella
Carub.0005s1234 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 7090560-7100559 Capsella rubella
Carub.0005s1234 10.0kb downstream 10.0kb downstream 10700 true scaffold_5: 7079860-7090559 Capsella rubella
Carub.0005s1234 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 7079860-7089859 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122334671 5261 Brassicaceae Singleton cluster - no MSA
123775484 5264 Brassicales-Malvales Singleton cluster - no MSA
124273892 5266 SBM Singleton cluster - no MSA
124256529 5268 Malvidae View MSA
124051515 5270 Rosid View MSA
123746623 5271 Pentapetalae View MSA
122796827 5272 Eudicot View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain