Gene : Carub.0005s1270 C. rubella v1.1
Defline:  (1 of 2) PF00069//PF00314 - Protein kinase domain (Pkinase) // Thaumatin family (Thaumatin) Genomic Order:  1270
Name:  ? Carub.0005s1270 Secondary Identifier:  ? PAC:39224402
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7409 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1270 0.5kb upstream 0.5kb upstream 3721 true scaffold_5: 7247550-7251270 Capsella rubella
Carub.0005s1270 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 7250771-7251270 Capsella rubella
Carub.0005s1270 0.5kb downstream 0.5kb downstream 3721 true scaffold_5: 7247050-7250770 Capsella rubella
Carub.0005s1270 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 7247050-7247549 Capsella rubella
Carub.0005s1270 1.0kb upstream 1.0kb upstream 4221 true scaffold_5: 7247550-7251770 Capsella rubella
Carub.0005s1270 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 7250771-7251770 Capsella rubella
Carub.0005s1270 1.0kb downstream 1.0kb downstream 4221 true scaffold_5: 7246550-7250770 Capsella rubella
Carub.0005s1270 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 7246550-7247549 Capsella rubella
Carub.0005s1270 2.0kb upstream 2.0kb upstream 5221 true scaffold_5: 7247550-7252770 Capsella rubella
Carub.0005s1270 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 7250771-7252770 Capsella rubella
Carub.0005s1270 2.0kb downstream 2.0kb downstream 5221 true scaffold_5: 7245550-7250770 Capsella rubella
Carub.0005s1270 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 7245550-7247549 Capsella rubella
Carub.0005s1270 5.0kb upstream 5.0kb upstream 8221 true scaffold_5: 7247550-7255770 Capsella rubella
Carub.0005s1270 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 7250771-7255770 Capsella rubella
Carub.0005s1270 5.0kb downstream 5.0kb downstream 8221 true scaffold_5: 7242550-7250770 Capsella rubella
Carub.0005s1270 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 7242550-7247549 Capsella rubella
Carub.0005s1270 10.0kb upstream 10.0kb upstream 13221 true scaffold_5: 7247550-7260770 Capsella rubella
Carub.0005s1270 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 7250771-7260770 Capsella rubella
Carub.0005s1270 10.0kb downstream 10.0kb downstream 13221 true scaffold_5: 7237550-7250770 Capsella rubella
Carub.0005s1270 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 7237550-7247549 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381708 5261 Brassicaceae View MSA
123841678 5264 Brassicales-Malvales View MSA
124350842 5266 SBM View MSA
124254633 5268 Malvidae View MSA
124074937 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain