Gene : Carub.0005s1289 C. rubella v1.1
Defline:  (1 of 2) PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1289
Name:  ? Carub.0005s1289 Secondary Identifier:  ? PAC:39225357
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1289 0.5kb upstream 0.5kb upstream 1727 true scaffold_5: 7324336-7326062 Capsella rubella
Carub.0005s1289 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 7325563-7326062 Capsella rubella
Carub.0005s1289 0.5kb downstream 0.5kb downstream 1727 true scaffold_5: 7323836-7325562 Capsella rubella
Carub.0005s1289 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 7323836-7324335 Capsella rubella
Carub.0005s1289 1.0kb upstream 1.0kb upstream 2227 true scaffold_5: 7324336-7326562 Capsella rubella
Carub.0005s1289 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 7325563-7326562 Capsella rubella
Carub.0005s1289 1.0kb downstream 1.0kb downstream 2227 true scaffold_5: 7323336-7325562 Capsella rubella
Carub.0005s1289 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 7323336-7324335 Capsella rubella
Carub.0005s1289 2.0kb upstream 2.0kb upstream 3227 true scaffold_5: 7324336-7327562 Capsella rubella
Carub.0005s1289 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 7325563-7327562 Capsella rubella
Carub.0005s1289 2.0kb downstream 2.0kb downstream 3227 true scaffold_5: 7322336-7325562 Capsella rubella
Carub.0005s1289 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 7322336-7324335 Capsella rubella
Carub.0005s1289 5.0kb upstream 5.0kb upstream 6227 true scaffold_5: 7324336-7330562 Capsella rubella
Carub.0005s1289 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 7325563-7330562 Capsella rubella
Carub.0005s1289 5.0kb downstream 5.0kb downstream 6227 true scaffold_5: 7319336-7325562 Capsella rubella
Carub.0005s1289 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 7319336-7324335 Capsella rubella
Carub.0005s1289 10.0kb upstream 10.0kb upstream 11227 true scaffold_5: 7324336-7335562 Capsella rubella
Carub.0005s1289 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 7325563-7335562 Capsella rubella
Carub.0005s1289 10.0kb downstream 10.0kb downstream 11227 true scaffold_5: 7314336-7325562 Capsella rubella
Carub.0005s1289 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 7314336-7324335 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374512 5261 Brassicaceae View MSA
123838117 5264 Brassicales-Malvales View MSA
124341456 5266 SBM View MSA
124249586 5268 Malvidae View MSA
124073026 5270 Rosid View MSA
123745848 5271 Pentapetalae View MSA
122795555 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain