Gene : Carub.0005s1062 C. rubella v1.1
Defline:  (1 of 1) K13071 - pheophorbide a oxygenase (PAO, ACD1) Genomic Order:  1062
Name:  ? Carub.0005s1062 Secondary Identifier:  ? PAC:39225596
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5098 Capsella rubella pathologic  
Crubella PWY-6927 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1062 0.5kb upstream 0.5kb upstream 3053 true scaffold_5: 6365259-6368311 Capsella rubella
Carub.0005s1062 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 6365259-6365758 Capsella rubella
Carub.0005s1062 0.5kb downstream 0.5kb downstream 3053 true scaffold_5: 6365759-6368811 Capsella rubella
Carub.0005s1062 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 6368312-6368811 Capsella rubella
Carub.0005s1062 1.0kb upstream 1.0kb upstream 3553 true scaffold_5: 6364759-6368311 Capsella rubella
Carub.0005s1062 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 6364759-6365758 Capsella rubella
Carub.0005s1062 1.0kb downstream 1.0kb downstream 3553 true scaffold_5: 6365759-6369311 Capsella rubella
Carub.0005s1062 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 6368312-6369311 Capsella rubella
Carub.0005s1062 2.0kb upstream 2.0kb upstream 4553 true scaffold_5: 6363759-6368311 Capsella rubella
Carub.0005s1062 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 6363759-6365758 Capsella rubella
Carub.0005s1062 2.0kb downstream 2.0kb downstream 4553 true scaffold_5: 6365759-6370311 Capsella rubella
Carub.0005s1062 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 6368312-6370311 Capsella rubella
Carub.0005s1062 5.0kb upstream 5.0kb upstream 7553 true scaffold_5: 6360759-6368311 Capsella rubella
Carub.0005s1062 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 6360759-6365758 Capsella rubella
Carub.0005s1062 5.0kb downstream 5.0kb downstream 7553 true scaffold_5: 6365759-6373311 Capsella rubella
Carub.0005s1062 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 6368312-6373311 Capsella rubella
Carub.0005s1062 10.0kb upstream 10.0kb upstream 12553 true scaffold_5: 6355759-6368311 Capsella rubella
Carub.0005s1062 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 6355759-6365758 Capsella rubella
Carub.0005s1062 10.0kb downstream 10.0kb downstream 12553 true scaffold_5: 6365759-6378311 Capsella rubella
Carub.0005s1062 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 6368312-6378311 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367692 5261 Brassicaceae View MSA
123834068 5264 Brassicales-Malvales View MSA
124342673 5266 SBM View MSA
124241153 5268 Malvidae View MSA
124063848 5270 Rosid View MSA
123748606 5271 Pentapetalae View MSA
122790785 5272 Eudicot View MSA
122042360 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121346632 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain