Gene : Carub.0005s1122 C. rubella v1.1
Defline:  (1 of 1) PTHR11062//PTHR11062:SF51 - EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED // EXOSTOSIN FAMILY PROTEIN Genomic Order:  1122
Name:  ? Carub.0005s1122 Secondary Identifier:  ? PAC:39224490
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5980 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1122 0.5kb upstream 0.5kb upstream 2546 true scaffold_5: 6637715-6640260 Capsella rubella
Carub.0005s1122 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 6637715-6638214 Capsella rubella
Carub.0005s1122 0.5kb downstream 0.5kb downstream 2546 true scaffold_5: 6638215-6640760 Capsella rubella
Carub.0005s1122 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 6640261-6640760 Capsella rubella
Carub.0005s1122 1.0kb upstream 1.0kb upstream 3046 true scaffold_5: 6637215-6640260 Capsella rubella
Carub.0005s1122 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 6637215-6638214 Capsella rubella
Carub.0005s1122 1.0kb downstream 1.0kb downstream 3046 true scaffold_5: 6638215-6641260 Capsella rubella
Carub.0005s1122 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 6640261-6641260 Capsella rubella
Carub.0005s1122 2.0kb upstream 2.0kb upstream 4046 true scaffold_5: 6636215-6640260 Capsella rubella
Carub.0005s1122 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 6636215-6638214 Capsella rubella
Carub.0005s1122 2.0kb downstream 2.0kb downstream 4046 true scaffold_5: 6638215-6642260 Capsella rubella
Carub.0005s1122 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 6640261-6642260 Capsella rubella
Carub.0005s1122 5.0kb upstream 5.0kb upstream 7046 true scaffold_5: 6633215-6640260 Capsella rubella
Carub.0005s1122 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 6633215-6638214 Capsella rubella
Carub.0005s1122 5.0kb downstream 5.0kb downstream 7046 true scaffold_5: 6638215-6645260 Capsella rubella
Carub.0005s1122 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 6640261-6645260 Capsella rubella
Carub.0005s1122 10.0kb upstream 10.0kb upstream 12046 true scaffold_5: 6628215-6640260 Capsella rubella
Carub.0005s1122 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 6628215-6638214 Capsella rubella
Carub.0005s1122 10.0kb downstream 10.0kb downstream 12046 true scaffold_5: 6638215-6650260 Capsella rubella
Carub.0005s1122 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 6640261-6650260 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363097 5261 Brassicaceae View MSA
123831248 5264 Brassicales-Malvales View MSA
124340138 5266 SBM View MSA
124238818 5268 Malvidae View MSA
124061648 5270 Rosid View MSA
123747135 5271 Pentapetalae View MSA
122787929 5272 Eudicot View MSA
122050562 5273 Angiosperm View MSA
121350610 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain