Gene : Carub.0005s1117 C. rubella v1.1
Defline:  (1 of 1) 1.3.8.4 - Isovaleryl-CoA dehydrogenase Genomic Order:  1117
Name:  ? Carub.0005s1117 Secondary Identifier:  ? PAC:39225711
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella LEU-DEG2-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1117 0.5kb upstream 0.5kb upstream 4140 true scaffold_5: 6617661-6621800 Capsella rubella
Carub.0005s1117 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 6621301-6621800 Capsella rubella
Carub.0005s1117 0.5kb downstream 0.5kb downstream 4140 true scaffold_5: 6617161-6621300 Capsella rubella
Carub.0005s1117 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 6617161-6617660 Capsella rubella
Carub.0005s1117 1.0kb upstream 1.0kb upstream 4640 true scaffold_5: 6617661-6622300 Capsella rubella
Carub.0005s1117 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 6621301-6622300 Capsella rubella
Carub.0005s1117 1.0kb downstream 1.0kb downstream 4640 true scaffold_5: 6616661-6621300 Capsella rubella
Carub.0005s1117 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 6616661-6617660 Capsella rubella
Carub.0005s1117 2.0kb upstream 2.0kb upstream 5640 true scaffold_5: 6617661-6623300 Capsella rubella
Carub.0005s1117 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 6621301-6623300 Capsella rubella
Carub.0005s1117 2.0kb downstream 2.0kb downstream 5640 true scaffold_5: 6615661-6621300 Capsella rubella
Carub.0005s1117 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 6615661-6617660 Capsella rubella
Carub.0005s1117 5.0kb upstream 5.0kb upstream 8640 true scaffold_5: 6617661-6626300 Capsella rubella
Carub.0005s1117 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 6621301-6626300 Capsella rubella
Carub.0005s1117 5.0kb downstream 5.0kb downstream 8640 true scaffold_5: 6612661-6621300 Capsella rubella
Carub.0005s1117 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 6612661-6617660 Capsella rubella
Carub.0005s1117 10.0kb upstream 10.0kb upstream 13640 true scaffold_5: 6617661-6631300 Capsella rubella
Carub.0005s1117 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 6621301-6631300 Capsella rubella
Carub.0005s1117 10.0kb downstream 10.0kb downstream 13640 true scaffold_5: 6607661-6621300 Capsella rubella
Carub.0005s1117 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 6607661-6617660 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365670 5261 Brassicaceae View MSA
123831930 5264 Brassicales-Malvales View MSA
124345831 5266 SBM View MSA
124243449 5268 Malvidae View MSA
124064222 5270 Rosid View MSA
123745101 5271 Pentapetalae View MSA
122788646 5272 Eudicot View MSA
122042062 5273 Angiosperm View MSA
121346887 5274 Embryophyte View MSA
123427095 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain