Gene : Carub.0005s1539 C. rubella v1.1
Defline:  (1 of 1) PTHR11817:SF28 - PLASTIDIAL PYRUVATE KINASE 4, CHLOROPLASTIC Genomic Order:  1539
Name:  ? Carub.0005s1539 Secondary Identifier:  ? PAC:39223883
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ANAEROFRUCAT-PWY Capsella rubella pathologic  
Crubella ANAGLYCOLYSIS-PWY Capsella rubella pathologic  
Crubella PWY-1042 Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY-5723 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1539 0.5kb upstream 0.5kb upstream 5495 true scaffold_5: 8264771-8270265 Capsella rubella
Carub.0005s1539 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 8269766-8270265 Capsella rubella
Carub.0005s1539 0.5kb downstream 0.5kb downstream 5495 true scaffold_5: 8264271-8269765 Capsella rubella
Carub.0005s1539 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 8264271-8264770 Capsella rubella
Carub.0005s1539 1.0kb upstream 1.0kb upstream 5995 true scaffold_5: 8264771-8270765 Capsella rubella
Carub.0005s1539 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 8269766-8270765 Capsella rubella
Carub.0005s1539 1.0kb downstream 1.0kb downstream 5995 true scaffold_5: 8263771-8269765 Capsella rubella
Carub.0005s1539 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 8263771-8264770 Capsella rubella
Carub.0005s1539 2.0kb upstream 2.0kb upstream 6995 true scaffold_5: 8264771-8271765 Capsella rubella
Carub.0005s1539 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 8269766-8271765 Capsella rubella
Carub.0005s1539 2.0kb downstream 2.0kb downstream 6995 true scaffold_5: 8262771-8269765 Capsella rubella
Carub.0005s1539 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 8262771-8264770 Capsella rubella
Carub.0005s1539 5.0kb upstream 5.0kb upstream 9995 true scaffold_5: 8264771-8274765 Capsella rubella
Carub.0005s1539 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 8269766-8274765 Capsella rubella
Carub.0005s1539 5.0kb downstream 5.0kb downstream 9995 true scaffold_5: 8259771-8269765 Capsella rubella
Carub.0005s1539 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 8259771-8264770 Capsella rubella
Carub.0005s1539 10.0kb upstream 10.0kb upstream 14995 true scaffold_5: 8264771-8279765 Capsella rubella
Carub.0005s1539 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 8269766-8279765 Capsella rubella
Carub.0005s1539 10.0kb downstream 10.0kb downstream 14995 true scaffold_5: 8254771-8269765 Capsella rubella
Carub.0005s1539 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 8254771-8264770 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364303 5261 Brassicaceae View MSA
123833815 5264 Brassicales-Malvales View MSA
124344183 5266 SBM View MSA
124244413 5268 Malvidae View MSA
124068114 5270 Rosid View MSA
123738415 5271 Pentapetalae View MSA
122787981 5272 Eudicot View MSA
122044331 5273 Angiosperm View MSA
121346943 5274 Embryophyte View MSA
123380469 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain