Gene : Carub.0005s1938 C. rubella v1.1
Defline:  (1 of 1) PTHR33317//PTHR33317:SF1 - FAMILY NOT NAMED // POLYNUCLEOTIDYL TRANSFERASE/ RIBONUCLEASE H-LIKE PROTEIN Genomic Order:  1938
Name:  ? Carub.0005s1938 Secondary Identifier:  ? PAC:39225563
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1938 0.5kb upstream 0.5kb upstream 2183 true scaffold_5: 9750779-9752961 Capsella rubella
Carub.0005s1938 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 9752462-9752961 Capsella rubella
Carub.0005s1938 0.5kb downstream 0.5kb downstream 2183 true scaffold_5: 9750279-9752461 Capsella rubella
Carub.0005s1938 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 9750279-9750778 Capsella rubella
Carub.0005s1938 1.0kb upstream 1.0kb upstream 2683 true scaffold_5: 9750779-9753461 Capsella rubella
Carub.0005s1938 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 9752462-9753461 Capsella rubella
Carub.0005s1938 1.0kb downstream 1.0kb downstream 2683 true scaffold_5: 9749779-9752461 Capsella rubella
Carub.0005s1938 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 9749779-9750778 Capsella rubella
Carub.0005s1938 2.0kb upstream 2.0kb upstream 3683 true scaffold_5: 9750779-9754461 Capsella rubella
Carub.0005s1938 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 9752462-9754461 Capsella rubella
Carub.0005s1938 2.0kb downstream 2.0kb downstream 3683 true scaffold_5: 9748779-9752461 Capsella rubella
Carub.0005s1938 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 9748779-9750778 Capsella rubella
Carub.0005s1938 5.0kb upstream 5.0kb upstream 6683 true scaffold_5: 9750779-9757461 Capsella rubella
Carub.0005s1938 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 9752462-9757461 Capsella rubella
Carub.0005s1938 5.0kb downstream 5.0kb downstream 6683 true scaffold_5: 9745779-9752461 Capsella rubella
Carub.0005s1938 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 9745779-9750778 Capsella rubella
Carub.0005s1938 10.0kb upstream 10.0kb upstream 11683 true scaffold_5: 9750779-9762461 Capsella rubella
Carub.0005s1938 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 9752462-9762461 Capsella rubella
Carub.0005s1938 10.0kb downstream 10.0kb downstream 11683 true scaffold_5: 9740779-9752461 Capsella rubella
Carub.0005s1938 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 9740779-9750778 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361081 5261 Brassicaceae View MSA
123830675 5264 Brassicales-Malvales View MSA
124342824 5266 SBM View MSA
124240635 5268 Malvidae View MSA
124067279 5270 Rosid View MSA
123746369 5271 Pentapetalae View MSA
122785614 5272 Eudicot View MSA
122048036 5273 Angiosperm View MSA
121349861 5274 Embryophyte View MSA
123381473 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain