Gene : Carub.0005s1980 C. rubella v1.1
Defline:  (1 of 3) 4.3.1.24 - Phenylalanine ammonia-lyase Genomic Order:  1980
Name:  ? Carub.0005s1980 Secondary Identifier:  ? PAC:39224564
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1121 Capsella rubella pathologic  
Crubella PWY1F-467 Capsella rubella pathologic  
Crubella PWY-7186 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1980 0.5kb upstream 0.5kb upstream 3265 true scaffold_5: 9884438-9887702 Capsella rubella
Carub.0005s1980 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 9887203-9887702 Capsella rubella
Carub.0005s1980 0.5kb downstream 0.5kb downstream 3265 true scaffold_5: 9883938-9887202 Capsella rubella
Carub.0005s1980 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 9883938-9884437 Capsella rubella
Carub.0005s1980 1.0kb upstream 1.0kb upstream 3765 true scaffold_5: 9884438-9888202 Capsella rubella
Carub.0005s1980 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 9887203-9888202 Capsella rubella
Carub.0005s1980 1.0kb downstream 1.0kb downstream 3765 true scaffold_5: 9883438-9887202 Capsella rubella
Carub.0005s1980 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 9883438-9884437 Capsella rubella
Carub.0005s1980 2.0kb upstream 2.0kb upstream 4765 true scaffold_5: 9884438-9889202 Capsella rubella
Carub.0005s1980 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 9887203-9889202 Capsella rubella
Carub.0005s1980 2.0kb downstream 2.0kb downstream 4765 true scaffold_5: 9882438-9887202 Capsella rubella
Carub.0005s1980 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 9882438-9884437 Capsella rubella
Carub.0005s1980 5.0kb upstream 5.0kb upstream 7765 true scaffold_5: 9884438-9892202 Capsella rubella
Carub.0005s1980 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 9887203-9892202 Capsella rubella
Carub.0005s1980 5.0kb downstream 5.0kb downstream 7765 true scaffold_5: 9879438-9887202 Capsella rubella
Carub.0005s1980 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 9879438-9884437 Capsella rubella
Carub.0005s1980 10.0kb upstream 10.0kb upstream 12765 true scaffold_5: 9884438-9897202 Capsella rubella
Carub.0005s1980 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 9887203-9897202 Capsella rubella
Carub.0005s1980 10.0kb downstream 10.0kb downstream 12765 true scaffold_5: 9874438-9887202 Capsella rubella
Carub.0005s1980 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 9874438-9884437 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363433 5261 Brassicaceae View MSA
123839790 5264 Brassicales-Malvales View MSA
124346801 5266 SBM View MSA
124254509 5268 Malvidae View MSA
124070450 5270 Rosid View MSA
123747775 5271 Pentapetalae View MSA
122795347 5272 Eudicot View MSA
122043246 5273 Angiosperm View MSA
121351477 5274 Embryophyte View MSA
123382181 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain