Gene : Carub.0005s1880 C. rubella v1.1
Defline:  (1 of 2) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  1880
Name:  ? Carub.0005s1880 Secondary Identifier:  ? PAC:39223751
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6689 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1880 0.5kb upstream 0.5kb upstream 2389 true scaffold_5: 9524049-9526437 Capsella rubella
Carub.0005s1880 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 9525938-9526437 Capsella rubella
Carub.0005s1880 0.5kb downstream 0.5kb downstream 2389 true scaffold_5: 9523549-9525937 Capsella rubella
Carub.0005s1880 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 9523549-9524048 Capsella rubella
Carub.0005s1880 1.0kb upstream 1.0kb upstream 2889 true scaffold_5: 9524049-9526937 Capsella rubella
Carub.0005s1880 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 9525938-9526937 Capsella rubella
Carub.0005s1880 1.0kb downstream 1.0kb downstream 2889 true scaffold_5: 9523049-9525937 Capsella rubella
Carub.0005s1880 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 9523049-9524048 Capsella rubella
Carub.0005s1880 2.0kb upstream 2.0kb upstream 3889 true scaffold_5: 9524049-9527937 Capsella rubella
Carub.0005s1880 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 9525938-9527937 Capsella rubella
Carub.0005s1880 2.0kb downstream 2.0kb downstream 3889 true scaffold_5: 9522049-9525937 Capsella rubella
Carub.0005s1880 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 9522049-9524048 Capsella rubella
Carub.0005s1880 5.0kb upstream 5.0kb upstream 6889 true scaffold_5: 9524049-9530937 Capsella rubella
Carub.0005s1880 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 9525938-9530937 Capsella rubella
Carub.0005s1880 5.0kb downstream 5.0kb downstream 6889 true scaffold_5: 9519049-9525937 Capsella rubella
Carub.0005s1880 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 9519049-9524048 Capsella rubella
Carub.0005s1880 10.0kb upstream 10.0kb upstream 11889 true scaffold_5: 9524049-9535937 Capsella rubella
Carub.0005s1880 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 9525938-9535937 Capsella rubella
Carub.0005s1880 10.0kb downstream 10.0kb downstream 11889 true scaffold_5: 9514049-9525937 Capsella rubella
Carub.0005s1880 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 9514049-9524048 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
122334595 5261 Brassicaceae Singleton cluster - no MSA
123775413 5264 Brassicales-Malvales Singleton cluster - no MSA
124273823 5266 SBM Singleton cluster - no MSA
124129374 5268 Malvidae Singleton cluster - no MSA
124064519 5270 Rosid View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain