Gene : Carub.0005s2048 C. rubella v1.1
Defline:  (1 of 1) K00761 - uracil phosphoribosyltransferase (upp, UPRT) Genomic Order:  2048
Name:  ? Carub.0005s2048 Secondary Identifier:  ? PAC:39224376
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7183 Capsella rubella pathologic  
Crubella PWY-7196 Capsella rubella pathologic  
Crubella PWY-7208 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2048 0.5kb upstream 0.5kb upstream 2709 true scaffold_5: 10114843-10117551 Capsella rubella
Carub.0005s2048 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 10117052-10117551 Capsella rubella
Carub.0005s2048 0.5kb downstream 0.5kb downstream 2709 true scaffold_5: 10114343-10117051 Capsella rubella
Carub.0005s2048 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 10114343-10114842 Capsella rubella
Carub.0005s2048 1.0kb upstream 1.0kb upstream 3209 true scaffold_5: 10114843-10118051 Capsella rubella
Carub.0005s2048 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 10117052-10118051 Capsella rubella
Carub.0005s2048 1.0kb downstream 1.0kb downstream 3209 true scaffold_5: 10113843-10117051 Capsella rubella
Carub.0005s2048 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 10113843-10114842 Capsella rubella
Carub.0005s2048 2.0kb upstream 2.0kb upstream 4209 true scaffold_5: 10114843-10119051 Capsella rubella
Carub.0005s2048 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 10117052-10119051 Capsella rubella
Carub.0005s2048 2.0kb downstream 2.0kb downstream 4209 true scaffold_5: 10112843-10117051 Capsella rubella
Carub.0005s2048 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 10112843-10114842 Capsella rubella
Carub.0005s2048 5.0kb upstream 5.0kb upstream 7209 true scaffold_5: 10114843-10122051 Capsella rubella
Carub.0005s2048 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 10117052-10122051 Capsella rubella
Carub.0005s2048 5.0kb downstream 5.0kb downstream 7209 true scaffold_5: 10109843-10117051 Capsella rubella
Carub.0005s2048 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 10109843-10114842 Capsella rubella
Carub.0005s2048 10.0kb upstream 10.0kb upstream 12209 true scaffold_5: 10114843-10127051 Capsella rubella
Carub.0005s2048 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 10117052-10127051 Capsella rubella
Carub.0005s2048 10.0kb downstream 10.0kb downstream 12209 true scaffold_5: 10104843-10117051 Capsella rubella
Carub.0005s2048 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 10104843-10114842 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122334664 5261 Brassicaceae Singleton cluster - no MSA
123841692 5264 Brassicales-Malvales View MSA
124343973 5266 SBM View MSA
124246802 5268 Malvidae View MSA
124068502 5270 Rosid View MSA
123740781 5271 Pentapetalae View MSA
122786054 5272 Eudicot View MSA
122047935 5273 Angiosperm View MSA
121345361 5274 Embryophyte View MSA
123424478 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain