Gene : Carub.0005s2109 C. rubella v1.1
Defline:  (1 of 1) 2.4.2.10 - Orotate phosphoribosyltransferase / Orotidylic acid phosphorylase Genomic Order:  2109
Name:  ? Carub.0005s2109 Secondary Identifier:  ? PAC:39224400
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY0-162 Capsella rubella pathologic  
Crubella PWY-5686 Capsella rubella pathologic  
Crubella PWY-7211 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2109 0.5kb upstream 0.5kb upstream 2610 true scaffold_5: 10358739-10361348 Capsella rubella
Carub.0005s2109 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 10360849-10361348 Capsella rubella
Carub.0005s2109 0.5kb downstream 0.5kb downstream 2610 true scaffold_5: 10358239-10360848 Capsella rubella
Carub.0005s2109 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 10358239-10358738 Capsella rubella
Carub.0005s2109 1.0kb upstream 1.0kb upstream 3110 true scaffold_5: 10358739-10361848 Capsella rubella
Carub.0005s2109 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 10360849-10361848 Capsella rubella
Carub.0005s2109 1.0kb downstream 1.0kb downstream 3110 true scaffold_5: 10357739-10360848 Capsella rubella
Carub.0005s2109 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 10357739-10358738 Capsella rubella
Carub.0005s2109 2.0kb upstream 2.0kb upstream 4110 true scaffold_5: 10358739-10362848 Capsella rubella
Carub.0005s2109 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 10360849-10362848 Capsella rubella
Carub.0005s2109 2.0kb downstream 2.0kb downstream 4110 true scaffold_5: 10356739-10360848 Capsella rubella
Carub.0005s2109 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 10356739-10358738 Capsella rubella
Carub.0005s2109 5.0kb upstream 5.0kb upstream 7110 true scaffold_5: 10358739-10365848 Capsella rubella
Carub.0005s2109 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 10360849-10365848 Capsella rubella
Carub.0005s2109 5.0kb downstream 5.0kb downstream 7110 true scaffold_5: 10353739-10360848 Capsella rubella
Carub.0005s2109 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 10353739-10358738 Capsella rubella
Carub.0005s2109 10.0kb upstream 10.0kb upstream 12110 true scaffold_5: 10358739-10370848 Capsella rubella
Carub.0005s2109 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 10360849-10370848 Capsella rubella
Carub.0005s2109 10.0kb downstream 10.0kb downstream 12110 true scaffold_5: 10348739-10360848 Capsella rubella
Carub.0005s2109 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 10348739-10358738 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374061 5261 Brassicaceae View MSA
123840006 5264 Brassicales-Malvales View MSA
124338602 5266 SBM View MSA
124250162 5268 Malvidae View MSA
124060638 5270 Rosid View MSA
123751852 5271 Pentapetalae View MSA
122789079 5272 Eudicot View MSA
122042153 5273 Angiosperm View MSA
121351237 5274 Embryophyte View MSA
123424950 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain